RNA id: XM_043222266.1


Basic Information

Item Value
RNA id XM_043222266.1
length 1964
RNA type mRNA
GC content 0.48
exon number 12
gene id dnaja3b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12536097 ~ 12542684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCACAGAGCGACGTAAAACATGGCAGCCTCCAGTGCTCGCTGCACTGCACGCTGGCTGTCAAGCGGTTTACCTGGACTCCGCAGCACCTGTGCCCTCATAAAGACCTCCAGACACGGAGGTGCCACAGCTCTGAGGATATGCTGGGTTCGCGGTTACGTGAAGGAGGGTCGTTTAAGCTGCTGGAGGCACATAGGAGCTGTGACATTGAACAGGGTGCCGGtgTTGGGAAGCCAGGGTGTTTTTGGCTCTCGTTTGTTCCACACTACTTCTGGGTGCCTTCAGAAGGACTTCTATGATGTTTTGGGGGTTCCCCGGACTGCCTCTCAGAAAGACATTAAGAAAGCCTACTACCAGTTGGCAAAGAAATATCATCCAGACACCAACCCAGATGACCCTgaagcaaaagaaaagtttgcCAAGCTGGCAGAAGCCTACGAGACCCTCAGTGACGAGCTGAAGAGGAAGCAGTACGACACGTACGGTTCTGCCGGGCCGGGTGCGAGCGGGGCGGAGCAGTACTGGAGGGGCGGGGCCAACGTGGACCCAGAAGAGCTGTTCAGGAAGATCTTTGGAGAGTTCGCTGGGGGGCGTGGCTTCGGCGACCTCAACTCCATGTTCGAACAGGCACCTGAATTTGTGATGGAGCTGACGTTCATGCAGGCTGCTAAAGGCGTGAATAAAGAGATAACGGTCAACATAGACGATACCTGTCCGCGCTGCGACGGAAAAGGTCACGAGCCGGGAACCAAAGTCTCACACTGTCACTACTGTAATGGAACTGGGATGGAGTCTATAAACACCGGCCCGTTTGTGATGCGCTCCGCGTGTAGGCGGTGCGGTGGGCGGGGCTCTATCATCATCACTCCTTGCGTCATGTGCAGAGGGTCTGGACAGACCAAACAGAAACAGAGCGTCATGGTCCCCGTTCCTGCAGGAATAGACGACAGACAGACAATTAAGGTGCCAGTCGGgaagaaatacatttacatcaCATTCAGGGTCCAGAGGAGTCCTGTGTTTCGTCGTGACGGCGCTGATATCCACTCTGATGTGATGATTTCGGTAGCACAGGCGATACTAGGAGGAACAGCCAGAGCACAGGGCCTTTACAGCACCATCGACATTGCGATTCCTCCAGGCATTCAGACAGACCACAAGATCATACTGTCAAGTAAAGGCATCCCACGCGTGAATAGCTTCGGTTATGGAGatcattatgtatatatcaaaatcaaaattcCTAAGAAACTGACAAACAGGCAGAGAATGCTGCTCTTAAGTTATGCAGAGGACGAGGTGGATGTGGAAGGAACTGTCACTGGAGTAACCAGACCAGCCAAACGTAGTTCTCAGGCCGGACGGACCTCAGaatcagagcagagcagagaggAAGAGCCAGAGAAAGAGGAAGGAGGATTTTTCTCCAAACTGAAGAAGATGTTCACCTGAAGATCACAGAAGACAGCGGTCTTGTGATGTTTTAGTGTAGAGTTGGtcaaagaggaggagaagagtgAAAGGAGTAGAAGAAAGAAGTGCGCTCCACACCATCTCCAGTCTGCTTCTACAGATTAACTGCTGAGACATCTCGGCATTAAACTAATGTTGATCCTTTAAAATCATGGATTAAAAGCAAAGTTAAATTCTTTGCCAATTCTCAGTCTGAGGATGACATGTCTAACCTGTGCTGTTTGGTAGACTATAAATGTTTCGATGGGGAAagtgaataaattgtaaaaagaaatctgttttgtaatgtattacATTTCTGTTTGTTAATATCAACACAAAAGgctatgttttattgttatcataTTCAAGGCTAATAAGCACTGCTAGCAACGCTTCAGCTGTGACtacatgataaataaaatgtgtagggcttgaatgcatttattttactgtctttttaaCTGTCTGATATATTAATTGAAgcgatttaaaatatatataatgtgtgta

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09504 DNAJA3; DnaJ homolog subfamily A member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225052 lncRNA upstream 109125 12426756 ~ 12426972 (+) True G152068
TU224994 lncRNA upstream 204252 12306554 ~ 12331845 (+) True G152028
TU224903 lncRNA upstream 268602 12241277 ~ 12267495 (+) False LOC122327127
TU225093 lncRNA downstream 36598 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 36598 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 38155 12580839 ~ 12620676 (+) True G152092
TU225101 lncRNA downstream 47229 12589913 ~ 12629300 (+) True G152101
TU225074 lncRNA downstream 61404 12604088 ~ 12655074 (+) True G152083
XM_043223457.1 mRNA upstream 32120 12485205 ~ 12503977 (+) True vasna
XM_043223942.1 mRNA upstream 57162 12473253 ~ 12478935 (+) True LOC122328225
XM_043223486.1 mRNA upstream 64762 12469118 ~ 12471335 (+) True LOC122327840
XM_043222229.1 mRNA upstream 111395 12421681 ~ 12424702 (+) True LOC122327055
XM_043222228.1 mRNA upstream 114440 12414582 ~ 12421657 (+) True LOC122327054
XM_043222259.1 mRNA downstream 102497 12645181 ~ 12650074 (+) True LOC122327087
XM_043223532.1 mRNA downstream 115380 12658064 ~ 12658715 (+) True mrps28
XM_043223525.1 mRNA downstream 146240 12688924 ~ 12699036 (+) True LOC122327869
XM_043223524.1 mRNA downstream 170611 12713295 ~ 12722332 (+) True LOC122327868
XM_043223935.1 mRNA downstream 180178 12722862 ~ 12732856 (+) True capn2l
TU225049 other upstream 112175 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 112175 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 190347 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 190347 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 241380 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 564822 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 567011 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 567017 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 567126 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 567131 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile