RNA id: XM_043222297.1


Basic Information

Item Value
RNA id XM_043222297.1
length 2825
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC122327115
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6986565 ~ 6994634 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AcgaaattaatattcatgaggtaAGCCCAAAGTCGGTTGGTGAGCAGGTGAACGCTGGATCCTTGccacaaagcaacaaaaatgccTTGACGAGGCATCAAACAAGGGAGAAAGCATCAGTTTGTACTGGCAGAAAAGCCAGGAGACAAAACACGGTCCGGTGTTCATTGGAAATGGAAGGAAATCAACTTCTTCATCGAAACGCGTCTGTTTCAAAGTAACCGACTCACCTGAAACTACCGAGACCACAGaAATATCAAGCACTCCAGCTAAAAGATGGCTGATGACCGTGTAGCCATCTTAACCGATGACGAAGAGGACCTAAAGAGGAGACACCTCGAGCGCTTCGACCGTCTGTCGCTTGAGATTCAATCAAACCAACCTTCGCAGTCATCCGTGGACAGTGTACCTAACGATTTGGCACCGGCTCCAACGCCTCAGCGTGACATGAGCTGCTGCGAACGTTTGCTCCTACGGGTCAACCCCTACCTTCTTGTgtcaaaagtgttttatttgttcttctATGCTGCATATGGTTCCCTCCATCCCCTTCTTGCGTTGTACTACAAGCAGCTGGGGATGAATGCCACCCAAAGTGGTCTCCTAGTGGGAATCCGTTATTTCATTGAGTTCTGTAGCGCCCCTTTTTGGGGCATTGTCGCAGATCGTTTCAGGAAAGGTAAAGCAGTCCTATTGTTCTCAATGTTATGCTGGCTCCTTTTCAATTCTGGGATTGGATTTGTGCAACCAGCAGATATGACATGTAACGAAGACAGCCCCCCGACGACCACAGCCATGATACCGACTGTCCATGTTACCACATCCAACGAGACCTTCTACCTCAACTCCAGTTCCATCTTAACAAACCAGATGAGACGCCGCAGAGATCTGATTGGACACTACCCTCGGCGAATCATACTATCCTCCATTTGGTCTTCAGGCTATAGCTCTGAACACCGATTCAAACGGGATTCAAACTTGAGTTTCACCGTGGCACCTGATGAGTTAGCTAACACAACGCAATCTGAGCAAAACACCACCGGGCACGAGCTAAGCACATCCACGCCTAATGCCACATCGGGCACCACTACTCAAAGTATTACaaccaaaccaaaccagacACCTGAATATAACATGGACCAGGTTCACGCCATTTTCCTGCTGATTTTGCTCGTCATTATCATTGGCGAGTTTTTCAGTGCTCCAGCTATTACTATCGTGGATACAGTGACACTGCAGTACCTGGGTGCACATCGTGACCGCTACGGTCTCCAGCGAATGTGGGGATCTCTAGGATGGGGTATCGCCATGCTCTGCGTCGGCATCTGGATCGATCACACTAACACTGATCTTGTCATTGGCAACACGGAATGCTCCATGGAAAATTACAAGAACTACCATATTGCCTTCATTGTGTTCGGCGTATTAATGGGAATCGCTTTGATTGTTGCTACTCAGTTTAAGTTTGATGTTCAGCACCAAAACAGGAGCGAAGGAACTGAGTTTGGCAACCAGCAGCAAAACACCCCTCCTGGAAGTTCCCCTGGAACAGAGAGCGCAGAGGCTCCAACAATTGTCCAAGTCGAGGAGTTCCACTTCTGGGATTTGATGCGACTGCTGTGCGGTGTACAGTACAGCACCGTGTTGTTCGTGGCATGGTTCATGGGCTTCGGCTATGGGTTTGTTTTCACTTTCCTTTACTGGCATTTACAGGACCTGACAGGAACCACAACGCTGTTTGGTGTTTGTTCTGTTCTGAGTCACGTGTCGGAGCTTGCTGCCTATTTCACCAGCCATAAGTTCATTGAACTGGTAGGACACATCAGAGTTTTGTACATCGGTCTGGCCTGCAACACCGCACGCTACCTCTATATCTCGTATCTCAAGAACGCCTGGACCGTGCTGCCAATGGAAGTGCTGCAAGGCATAACGCATGCGTCTGTATGGGCGGCGTGTATCTCATATTTGAGCGCTGCCGTACCTCCACCTCTTCGGACGTCCGCTCAAGGCATCCTGCAGGGTCTCCACCTCGGGCTGGGCAGGGGCTGTGGGCGATGGTCGGCGGGGTTTGTCAACTACTTTGGCGTTGCCGAAACATTCAGGGGAATAGGAATGACGTCGCTTGTTATTTTGCTGATCTTTTCATTAATAATGTGCATCACTGGCCAGAATGAGAAAAAAGAGGACAAGATGCTAGCAGAGAACATTCCTATCCCATCCAGTCCTGTTCCCATAGCGACTATTGACCTGGTTCAGAGCACAACGGACGCAACTGCACCTGCTCGACCCGAACCCAAACTTCCTGCTCGGAAAACACGGCAccaggaggagcaggaggatctGAACAAGCCCGCCTGGGTTCCCTCTGGGTCGCCGCTGGTTACAGTCGTTCTGCTGTTCTACCAAATCAAAGACATGGTCATCATTGCAAAGACCCCTGTGGAGGTCCAACCCCTTCAGGACACAGATGAGATTCCCCCAGAATCTCGAGAAGGAGACCAATCACCTCCCATCGTTGGCAATGGCGTGCGACAGGACGGCAGTCTCGGTGGGCTCCGGTCCCAGGAGGACCCCGGGCCCCCAGGGGCTGCCTCACAACTGGAATTCCCGACACGGGACACACGGCCTGTATTACAAGCAAACGGCTGATTCGGCAACCCATGGGTATTTTTCTCTCCACATGGTGACTTTGTTTTTCGTTGTGAAGCGTTTTTATGGGGAAAATACAAGGAAGAAGGACGAGCTTCATCGTATAAGTGACCTTTAACTTATTTCCAGGTGTTTTGCACGTGCTATAAATAAAGCCTGGCCGGTTTTAAACTGTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222754 lncRNA downstream 45939 6939618 ~ 6940626 (-) True G150494
TU222714 lncRNA downstream 47565 6822203 ~ 6939000 (-) False glsa
TU222764 lncRNA upstream 8326 7002960 ~ 7004118 (-) True G150503
TU222802 lncRNA upstream 10422 7005056 ~ 7005447 (-) True G150538
TU222805 lncRNA upstream 26129 7020763 ~ 7021683 (-) False LOC122327113
TU222806 lncRNA upstream 27767 7022401 ~ 7022697 (-) True G150542
XR_006247727.1 lncRNA upstream 176708 7171342 ~ 7174445 (-) True LOC122327846
XM_043222299.1 mRNA downstream 14605 6962514 ~ 6971960 (-) False LOC122327116
XM_043222298.1 mRNA downstream 14607 6962514 ~ 6971958 (-) True LOC122327116
XM_043223882.1 mRNA downstream 51992 6929150 ~ 6934573 (-) True LOC122328177
XM_043222300.1 mRNA downstream 57295 6926964 ~ 6929270 (-) True LOC122327117
XM_043223881.1 mRNA downstream 106097 6874459 ~ 6880468 (-) True LOC122328175
XM_043222301.1 mRNA upstream 3274 6997908 ~ 7002547 (-) True LOC122327118
XM_043222295.1 mRNA upstream 26120 7020754 ~ 7055562 (-) True LOC122327113
XM_043223523.1 mRNA upstream 63523 7058157 ~ 7106640 (-) True ahr2
XM_043223787.1 mRNA upstream 240267 7234901 ~ 7283785 (-) False cntnap5b
XM_043223788.1 mRNA upstream 240267 7234901 ~ 7283774 (-) False cntnap5b
TU222752 other downstream 73007 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 96908 6854770 ~ 6889657 (-) False nab1a
TU222740 other downstream 105096 6854770 ~ 6881469 (-) False nab1a
TU222746 other downstream 117019 6867843 ~ 6869546 (-) False mfsd6a
TU222738 other downstream 129702 6854770 ~ 6856863 (-) False nab1a
TU222808 other upstream 35673 7030307 ~ 7055202 (-) False LOC122327113
XR_006247718.1 other upstream 615222 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 615222 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1889487 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 2018914 9013548 ~ 9171931 (-) False nfia

Expression Profile