RNA id: XM_043222301.1


Basic Information

Item Value
RNA id XM_043222301.1
length 1712
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC122327118
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6997908 ~ 7002547 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gatagatagacagagagacagacagacagacagacagatagatagatagatagatagatagatagatagatagattgatagattgATGGAAGGAAATGATTGTATGCAAATGAATTGAACATCCTGTAATCCCGTGAATCCCGGCGGAGGATTAGAGTCACTCGTTCACTTTCATCCCTGCTGTGTTTTACTGTGAGATGAAGAATCTTGACCATAAACTGTCATAATCCCAGCAAACGGCACAAATCACTCGTGAGTGAAGAATGACCGTCTCACGCTCTACACTGCATCCTGAAATCATCTTCAGCTATACCTGCACGGATACATGATCTGAGGGGTTCGGGTGAACAGAGGCGGCCCACCTGAAGGAATGGGGAGGACGAGTTACGCGAATCTCCCCAAGACCGGATCCATACCCGAAAGTCTGCCCCTGTACAATAGCGTTTCCCTCCCGGCTGCAAACACACAGCGTCTGCTGCACAGACACATGAACACGCTCCCCACCTGCGGCTGCTCCTCCGATGACAGACGCCGCACTCAAGTCCAGTCCATCTCCACGAGCCACAACATCACCTACGACTGCACCTGCCACGAGGAGCTCAAAATCAGCAACTGCACCAGCAGCAATTTTACTCACGTGCCCGCCGCTCTCCCACCCTTCACCGAACAGCTGGACCTGTCCCTCAACCACCTCAGCGCCATCCGTCCCCGAGCCTTCCACAGCACACGAAGACTTCGCATCCTGCTCCTCAATGACAACGTGATCGCTGCTCTGGCCAACGGGGCGTTCTCTCTTCTGGAAGGACTCTTGAGGTTGGACCTGAGCCGAAACCGAATCTCATTCCTGGGCGAAGGATTTTCCCAGGGTCTCAGTTCCCTTCGAGATCTGTCACTGGCGGAGAACCGATTGACCAGCTTGGACAGCAGCTGTTTCGTCCACTTTGACTCCCTCCAAAGACTAAACCTCAGCCATAATGCAATCGAGACCATCAAGATGAGGGCGTTTGGGTCCATGAGTACCCTACGCCAGCTACAACTCAACTCCAACAATTTAACGGTTCTCAATAACGGCATCTTCTCCATGCTACGAAACCTTGAAGTCTTGAATTTACATCACAATCAGATACACTACTTGGACGTCGGCGTGCTTTCTCCATTGACCAGCCTCGCGTTACTGGACCTCACCAACAACAACCTCTCCACGATTCAGTTCAAGACCTTCCTGAGTCTCAACACGTACAGCACTCACATAATGCTCCAAGGAAACCCGTGGAATTGCGACTGCGATCTGCAGCGAGTCTTTCAGAAGCTCTGTAACGTCAAGCGGCTCTTCCTGGACGACTACGACAACCTCACTTGCGTGAATTTGGACGAAAGTCAAAGGAACTACACGATGAAAGAGGAGTTCTGCGTGGCAGAGATGGTTACCGTCCTGGTCATCACCATCACGGTGGTCATCACTGTTGTGGCTGCCATAGTCATGgcggagaagaaaaggaaaaaaaagaacaaagaaaagcaTTGGACGGAAGTGGGCGAGTTGTCGTGCGCATCGCAAGACTGAACCAGATAATGCGGATAATGCAAGGAAGGAACATTAATCTTGCATTGTATGgtattatgctttattttgttcaatACAGGGTGTCTGcaaattttgtaaatttttaagACCaagttataaaaatgtaaaggaatatttcacccaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222754 lncRNA downstream 57282 6939618 ~ 6940626 (-) True G150494
TU222714 lncRNA downstream 58908 6822203 ~ 6939000 (-) False glsa
TU222764 lncRNA upstream 413 7002960 ~ 7004118 (-) True G150503
TU222802 lncRNA upstream 2509 7005056 ~ 7005447 (-) True G150538
TU222805 lncRNA upstream 18216 7020763 ~ 7021683 (-) False LOC122327113
TU222806 lncRNA upstream 19854 7022401 ~ 7022697 (-) True G150542
XR_006247727.1 lncRNA upstream 168795 7171342 ~ 7174445 (-) True LOC122327846
XM_043222297.1 mRNA downstream 3274 6986565 ~ 6994634 (-) True LOC122327115
XM_043222299.1 mRNA downstream 25948 6962514 ~ 6971960 (-) False LOC122327116
XM_043222298.1 mRNA downstream 25950 6962514 ~ 6971958 (-) True LOC122327116
XM_043223882.1 mRNA downstream 63335 6929150 ~ 6934573 (-) True LOC122328177
XM_043222300.1 mRNA downstream 68638 6926964 ~ 6929270 (-) True LOC122327117
XM_043222295.1 mRNA upstream 18207 7020754 ~ 7055562 (-) True LOC122327113
XM_043223523.1 mRNA upstream 55610 7058157 ~ 7106640 (-) True ahr2
XM_043223787.1 mRNA upstream 232354 7234901 ~ 7283785 (-) False cntnap5b
XM_043223788.1 mRNA upstream 232354 7234901 ~ 7283774 (-) False cntnap5b
XM_043223786.1 mRNA upstream 232354 7234901 ~ 7283774 (-) True cntnap5b
TU222752 other downstream 84350 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 108251 6854770 ~ 6889657 (-) False nab1a
TU222740 other downstream 116439 6854770 ~ 6881469 (-) False nab1a
TU222746 other downstream 128362 6867843 ~ 6869546 (-) False mfsd6a
TU222738 other downstream 141045 6854770 ~ 6856863 (-) False nab1a
TU222808 other upstream 27760 7030307 ~ 7055202 (-) False LOC122327113
XR_006247718.1 other upstream 607309 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 607309 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1881574 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 2011001 9013548 ~ 9171931 (-) False nfia

Expression Profile