RNA id: XM_043222316.1


Basic Information

Item Value
RNA id XM_043222316.1
length 1491
RNA type mRNA
GC content 0.47
exon number 6
gene id hsd11b1la
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10422888 ~ 10426307 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTTATTGCTCCCAAAATTATTTGCGCGACGTAAATCGCATTGAACTTTGATATGACTCCGCCTTTTGACACACATATGATCCTGTTCTGCTGGTTCAGTTAGAGCAACCACGTTACTGATTTTTGACAGTTGATCAACTGCATACTTTCGTGCATTTTAATCGTACACAAATGAATTTTTACGCAAAGTTATTGTTGCTGGGCAGCACATGCGTTGCTTTCATCGCGTTTCGATGGAGCGCTCCATCATTTAATAAAGAGTCCTTGAAAGGTTCCAGGGTGCTGGTGACCGGCGCCAGTACTGGCATCGGCGAGCAGCTGGCGTACCACTACGCCCGTTTAGGAGCCCAACTCGTTATCACGGCGAGGAGAGCAAACGTCCTAGAACAGGTTGCGAGTAAGTGCTTGGAATTGGGAGCTCAAAGGGCCTTGTTCGCCCCTGCGGACATGGCGAGCCCCTCGGAGGCTGAAAAGGTCGTGCAGTACGCCATCGAACAGCTCGGGGGTCTGGATTACCTGGTTCTGAATCACATCGGGCCCAGTCCATACGGAATGTGGGATGGAGACGTGGAGCACACTCGATGGCTGCTAGAGGTCAATTTTCTTAGTTACGCACAGATGACTCAGAAAGCTCTGCCAACTCTTGAAAAGAGTAACGGATCGATAGTTGTGGTTTCCTCCCTGCTAGGTAAAATATGCGGCCCCTTTGCTTTGCCGTATGCCGCAACGAAATTTGCACTCAATGGTTTCTTTGGAGGCCTTCAGCATGAGCTAGCTATGCAAAAAAGCAAAGTGTCCATAACCATCTGCATACTCGGCCTGATCGACACAGACAGCGCAATGGAGAAAATCAAAGGTTACATCAATATGACTGCCTACCCTTCACACGAAGCTGCCTGGCACATTATCGAAGCTGGAGCATCTCGACGGCCTGAGACCTTTTACCCTTGGTACACCTTCTACGCCTGTATATTCAGGGATTGGTTCCCATACGCCAGGGACCAGGCCATTCAAAAGTCCTACACATATAATCCACAAGTTACCAAAGAACAAGTTTCTGGAAGATGACAGCGGAAAATCGACTCGTGGAGCGGAGCATTATAGGTTAACGTATCGTGCTTTTACGCGCCAAGCCCCGGTGCTCATGTGGGTGATGAGTTCTTCTCTCTGTTGTTAAAGACCAAAAATAAAGCTATACCCTACTAAGAAGTTTTTTATGATTAAGGTGATCTGCATTACATCATCAAGCACACACTGCGGTAAATATTAAAAGAGTTTAGCATTGTGTGTTTTCCCTGTTCGCAAACgttgtgcactttttgtgtcaGAAGCTGTCAAAAACCATATGTTTCATGTAATCAGGACGCCGAACGGAAGTTGCTTTGTCTGCTTCAGCTCTGTAAAGCCCTCTGGACTTACCTCACACTTTCTTATCAGCCGCACACGCTATCGATGTTTGTAAACTCTACAGTAAAGATGTCCCACTGAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005576 extracellular region cellular_component
GO:0016229 steroid dehydrogenase activity molecular_function

KEGG:

id description
K15680 HSD11B1; corticosteroid 11-beta-dehydrogenase isozyme 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224196 lncRNA upstream 1852 10388550 ~ 10421036 (+) True G151516
TU224164 lncRNA upstream 74002 10347829 ~ 10348886 (+) True G151487
TU224024 lncRNA upstream 233716 10188578 ~ 10189172 (+) True G151382
TU224015 lncRNA upstream 235305 10185635 ~ 10187583 (+) True G151373
TU223986 lncRNA upstream 260442 10151480 ~ 10162446 (+) True G151345
TU224294 lncRNA downstream 239749 10666056 ~ 10669212 (+) True G151592
TU224310 lncRNA downstream 275315 10701622 ~ 10702328 (+) False LOC122327757
XR_006247710.1 lncRNA downstream 275566 10701873 ~ 10709748 (+) True LOC122327757
TU224309 lncRNA downstream 281092 10707399 ~ 10709755 (+) False LOC122327757
TU224316 lncRNA downstream 284206 10710513 ~ 10711972 (+) True G151603
XM_043223903.1 mRNA upstream 4672 10413349 ~ 10418216 (+) True LOC122328195
XM_043223901.1 mRNA upstream 10434 10410257 ~ 10412454 (+) True LOC122328194
XM_043223451.1 mRNA upstream 14405 10407145 ~ 10408483 (+) True LOC122327820
XM_043223452.1 mRNA upstream 21161 10400426 ~ 10401727 (+) True LOC122327821
XM_043222364.1 mRNA upstream 23340 10398269 ~ 10399548 (+) True LOC122327181
XM_043223909.1 mRNA downstream 30898 10457205 ~ 10463197 (+) True rgmd
XM_043223318.1 mRNA downstream 289933 10716240 ~ 10720317 (+) True hmg20b
XM_043223231.1 mRNA downstream 294793 10721100 ~ 10759871 (+) True unc13a
XM_043223234.1 mRNA downstream 294793 10721100 ~ 10759871 (+) False unc13a
XM_043223232.1 mRNA downstream 294793 10721100 ~ 10759871 (+) False unc13a
XR_006247720.1 other upstream 429447 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 459254 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 459254 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 459254 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 529399 9888200 ~ 9893489 (+) False borcs8
XR_006247780.1 other downstream 282737 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 379745 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 389828 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 492753 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 892382 11318689 ~ 11323940 (+) False mier2

Expression Profile