RNA id: XM_043222363.1


Basic Information

Item Value
RNA id XM_043222363.1
length 3117
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC122327180
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15220447 ~ 15288892 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCTGCTTCTCATGACCTCACTCGCTTCAAGTCGCGACGCTTCCAACGGAAAGCGCGTCAACCGTTTGCTAAACTTTACTCTTCGAgataaaatgctacatttatgACTTTCGACCGTAACTTTACCTCGTATCAGgatgAATCTGTTGAAAATTATTTGCTCCAACGTTATTGTCCTCATTCATCACTGCATGGAAAAAGCGGAGGGCAGAGTCCTGCTCACGCACGATGACTATTACCCCGAGTACGTGCCCGATCGACAGCCGTGGGACATTGCCCGCAGCCTCTGCCTCCAGCGTTCGGGGTCCTTCGTGATGATGTCCAGTACCGAGGAGATTCAAAAGCTGAACGGCTTTCTCCGATCCCTAAATATCACCCAACCCGTATGGATCGAAAGTGCAGGCATGTTACAAAAAAGCGGTTCTAAAATCCAACCACAAGAACAGCTGGTCATCTCTGGTTTGGATCCAAACCTGCATCACAATCTTTCCATCCTTTCTCACAAGACCTGCGAAGCCTTTGACCCTGCGAGTGGAAAACCCATTAGTAGCTTGTGTACCACACAAAGAGGAAGTGTTTGCCTGTTCCCAAAAGAGCAGCTGGACTTTGCTTTTCCTGGAACCTTGTTCTTCTCACAAGTCAGCAGTGAGattcattccaaacctGATATAAATGTAACCTTGTACCCTGAGACCGATCTGACTCGTCATGTTTCCCTCTTGGGTGCCATATTGAGAGTTCTGGACAGCACAGCAGACATCCTCACACATTCTGATCTTCTCTACCTCACAGAAACCATCGATAAGGCCACTCAGTTCAATAAAATAGTACTTTCCACAGATGTCTTCATTTCTATGGTCCGCAGTTGCTTGGAACTAGTCAGCAGGCTCATCAACCCTGACATGGCCAAACAATGGGAGGATCTGATAGCACATGAGAATTACCCTGGACCGTTGACAATGGTGGAGAACATTGACAAATTGCTGTGTATGCTGGCGGATGCTCTCTGGATTGACCGCAAGAGCTTCATAATGTCAACAAAGAACATGAATATTCATCTGGAGCCGCGTAGGCTGACGCCAATGAGCTGCGGTTGTGTGTTCAAGCCCTCGGTTCACAGTGGACAGTTCGGCAGCCATGATGAGATCCTCATACCAGAGTCAGAAATGCAGCGAGTCTTTTCTCTGGGCCACAAGGAAGTGATGGTTATTCATACCTACTACAGTAACCTGTTAGAGATGTTTTCCAGACTGGAGGTGAAAACCCATACTGACCAACAGGAAGACAAGAGGCATCACACTGGTCAACTGGCCACAGCAGTAATCTCGGCAACAGTTCGAGATGTTTCCAGGGAAGAAAATGTTCCTGTCTCTGTCCAGTACACCCTATCCTCTGGGATTATGacAGAGTATTCCAAACAAATCGCTGCCGTCTGCATCTTCTGGAATATCATGGAGGGTCATGCAAGTGGTTGGTCCAAAAAAGGGTGCAGGGTGCTGCCTTCTCCTcctgatgtcacttcctgctTCTGCAATCACACCACCAATTTTGCTGTCCTTATGAATTATATGGAGCACAGGTGGAGTGCTAAAGAGGAGAGCGTTCTGACGAAGCTGACGTTTATCGGATCCGGAGCGTCTCTCTGCGCACTGGTGGTGACCTTGATGCTGTTTACCGTGTTAGAcatCCCAAAATCAGATCGGATATCAGTTCACAAAAATCTTTTTGTGTCTCTGACTTGTGCTCAAATTGTCCTTCTCTGCAGTGGTTCTGCTGTTCATAACAagGTGGCCTGCACGCTCGTGGCCGCTCTGATGCATCTGTTCTTCATGGCAGCGTTCAGCTGGATGCTGGTGGAGGGCCTGCTGCTCTGGAGCAAAGTAGTGAGCGTTAATTTGAGCGAGGACCGGCACATGAAATACTACTACCTGATTGGCTGGGGTCTGCCCGTGCTGATTGTGGCCATCACGCTGGCTTCTGCTGCTGGGAATTACTCAGCGGACGGTCACTGCTGGCTCAGTGTTCAGAACGGAGTCATATGGGGCTTCGCGGGACCCGTCATCTTCATCATTATGGTGAACGTCATGATTCTGACCCGCGTGGTCGTGATCACCATCACCACAGCTAAGAGGAGATCTTTGATGATGACTCTGAACAGCAGTCCAGAGGAGCAGGTCTCGGAGCAGATCAGGGCAGCAGTGAAAGCCGTGCTGGTCCTGCTGCCGATCCTGGGCCTGACGTGGCTCTGCGGCGTCCTGGTGCCCTTCTCCGTGGTGATGGCGTACGTCTTCAGCCTTCTGAACTCGCTGCAGGGCCTCTTCATCTTCCTGATATATGGAGTGTACAACACTGAGGTTCGAAACACAGTCAACAGAatcaaagaaagaagaaaagcctTAAATTTCTCCaactgTGCCAGTTCCAGGCCCTCCAGTTCAGTGGGCAGTTCTCGACCGGGCAGCTCCCCAGGACCAGGTGTTTTGGACGGCCAAACAGTCACTTACTCCAGCAGCTCATCGACCCACAGCGACAACATCACCCAGAGTTACGACAAAACAAGGCATCTGTCCCTCCCCTGTGTCCACGACGACTTAAATGAAGAGCTGCGATGTCCTGACACTGGTGTCCACCTCTCTGGACAGGAGAACTTGAGAAAAGCTAAAGACAGACTTCCGAACGAGTGCAGTCTGAACGTACCCATGGAGGCCGAACTGACGTCCCACTATTCTCCTCCTCAGCAGAACAGAGATGTGTGTCTCCACTGAAACCCATCTTCACGTCTCGTGTTTTGGTAAAGCGCAGTTAGCGTGCGTTTGAtatccttaaagggatagttgacccagaaattacaattctgtcgtaatttattcaccctcacatttttcagcttttattttagttttgcttctgttgctttgttttgttttcctttccgttcctctgcttttgttttatcctccattaaaatgtctgcttttctttcttatgtCTCAAGATCATTTGAAGAGCGCTGGTAAACAAACATTGACTTCTGTAGTATGggcaaaaatgtgtttgatcACCAGtactctttaaaatatctttttggtTCAggtaaatgacataatttttattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226598 lncRNA upstream 82824 15136335 ~ 15137623 (+) True G153083
TU226578 lncRNA upstream 108469 15110215 ~ 15111978 (+) True G153065
TU226553 lncRNA upstream 113521 15078846 ~ 15106926 (+) True G153050
XR_006247706.1 lncRNA downstream 1803 15290695 ~ 15311067 (+) True LOC122327701
TU226731 lncRNA downstream 162557 15451449 ~ 15512639 (+) False G153178
TU226739 lncRNA downstream 165072 15453964 ~ 15454729 (+) True G153180
TU226740 lncRNA downstream 166020 15454912 ~ 15490268 (+) True G153181
TU226742 lncRNA downstream 179158 15468050 ~ 15516152 (+) True G153182
XM_043223940.1 mRNA upstream 683 15195916 ~ 15219764 (+) True kif14
XM_043223096.1 mRNA upstream 25575 15189827 ~ 15194872 (+) True ddx59
XM_043223844.1 mRNA upstream 84851 15130400 ~ 15135596 (+) True scamp4
XM_043223127.1 mRNA upstream 100618 15114186 ~ 15119829 (+) True ubxn6
XM_043223538.1 mRNA upstream 217477 15001033 ~ 15002970 (+) True LOC122327882
XM_043223763.1 mRNA downstream 334203 15623095 ~ 15712086 (+) True dennd1b
XM_043223765.1 mRNA downstream 334203 15623095 ~ 15712086 (+) False dennd1b
XM_043223764.1 mRNA downstream 334203 15623095 ~ 15712086 (+) False dennd1b
XM_043223766.1 mRNA downstream 334203 15623095 ~ 15712086 (+) False dennd1b
XM_043223769.1 mRNA downstream 334203 15623095 ~ 15712086 (+) False dennd1b
TU226683 other upstream 3505 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 528639 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 757787 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1177926 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1253222 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 715672 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 833548 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 837644 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 839018 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 840394 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile