RNA id: XM_043222369.1


Basic Information

Item Value
RNA id XM_043222369.1
length 4740
RNA type mRNA
GC content 0.48
exon number 4
gene id dag1
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17040662 ~ 17069967 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGACAGGGAGTCAGACAGCAAGTGCGGAgccgctctcacacacacacacacacacacagctcacacACAGCTCACACACGCCGAGGCGCGAGGCTGGAGAAACCCTCGACATGTGACCGCTGCCGACACCTActttcattttgtctttcttttttaatttgatttcctTCGTCGTAAAGACTCCGGGCAGGACGCGTAATCGAGCGCCGCGCAGTCGTCCCGTGGATTTGCCGGGAATATCTCATCCTCGTTTTGGCGATTGTTGCTCGTTTCTCTCCCGGATCCTCCCGAAGGACGAGGAGCGAGCGTCCCACCGACCTCCGGCGATCATAACCCGCCCGCGACGACACTGCTCTGAACGGGATTTTATCGCTTTCGGAGTGAAGCCGGTTCGTGTCCAGCAGTGTGAACGatTGATTCGTGTAGATGGAGAGAGAAGAGAGCTAGAAGGGCGAGATTTCTTCTCCTCCTCGCGCTCGGATGCGTTTATAAGCGTGACATCCAGGCGCTGTAATAGCTGCGATGCGACGCCGATCCGTTCCGACCGAGGTCTTAGAGGCAGCCCCTTAACTATGGGATTTCAGAACTACTGAGGGCACTTCCACAAAAGGAGGGAAAAGGGGCCGGCGACGGGAACAAAAGGAGAGGATTGAGCTTTTGAAAAGAGGATCAGTTCTTTCGGACTCAGCGGGGTGCATGCTGCCCCCTCAACTGGACGTCCTCTTTTGTGCGagtgagagaaaataaaagcaggCATGCGCAATAAACTGAGAGAGTTCCGGGATGGGGGATGCCCCATGCTGGGGCAGAGGGACAGGACTCTTCTGGTGCTTCTGGCCACAGTGGTGCTGACAGTAACGGAAGTGCGGGCTTCCTGGGATCAGAACCCAGTGGAAGTTCTAGGCGACGTGAGGCAGCTGGAGGCGTCTATGCACTCGGCGGTGCTGTCGGACCTACGTGAAGCGGAAGCGGCAGTGTCACTTCCAGGCGGCTTCCCAGACTCCTCAGCGGTGGTGGGCAGGGTGTTCCAAATGCGGGTGCCCATCAAAGCCAAGAACTCCAGGTGCACAGTAAAGATCACAGAAGCAAGCAAGGATGTGCTCCCAGCATGGTTGCATTGGGATGCAGAGAGTGGCACACTTCAAGGCCTTCCTCTAGAGACAGACAAGGGCGTTCACTACATATCCGTTTCTGTTTCCAACGAGAGCCAAGTCTCCCAAAGCCCAGATGTATTCTCCATTGAGGTGCACCCAGAGGAGCATGCTGATACGGACCCTTTTCAGCTTGCAATTCAACAGTCAGCCAGCAACGATGTCCAACCTTTCATCTGTGGCAATGAGGAGCCTGTTACTGTGCTTACCGTCATTCTGGATGCTGACCTCACAAAGATGAGCTCGAAGCAGAGGGTGGAACTACTTGCTAACATGAAGAAGTTTTCTGGCATGGGGCTTCAGCACATGAAGATTTTGCCTGTGGTCAACAACCGTTTGTTTGACATGTCTGCTTTCATGGCAGGACCGGGAAATGCTAAGAAGGTGGTTGAAAACGGAGCCCTTTTGTCCTGGAAGCTTGGCTGCAGTCTGGATCAAAGCAGCATTCCTGATATCAGTAGTGTTCAGGTTCCCGCAAAAGAGGGAACCATGTCTGCGCAGTTGGGATATCCAGTCGTTGGGTGGCATATCGCTAACAAAAAGCCCCATGTACCCAAAAGGGTGCGAAGGCAGCTCAACAACACTCCCACTCCCATTCCCTCATTACTCCCCCCAACAACTTATCCTGAGCCCCCCATTCGTATCGTTCCCACTCCGACTTCCCCTTCTATTGCTCCTACCTCAGACAGTTCTGCTCCACCTGTTCGGGGTCCTGTGCCACTTCCTGTGAAACCCACCATTCGAAATCGAGATCCCATTGCCTACACTCCAACCCTAGGCCCCCCTCAGCCAACACGAGTAATGGACACCACCAGCACAATCGCAATCCAGCCCACTATGACCAGGCCTGTGTATGTTGGTGCCTCTGTGACGCCAGCAACACCCACCACCAGGAAACCGACAAAAAGACCTGGAAAGAAACCCAAGACAACTCCAATACCAAAAGAACCCAAGACCACCACAACCAAGCCACCAAGGCGCACAACACCCCCTGTTATTCTAATTGAAGGCAATATAAAACCCCAGCTGCGAAACCCGATCGACCAGGTGAATGCCTACGTTGGCACCTACTTTGAGGTGAAGGTTCCATCTGATACATTTTTCGACAAAGAGGATGGAACTACTGATAAGTTGAGACTCACCTTGCGCAAGGGCAATGATGTGGTTGGAGATGATTCCTGGATACAATTCAATAGCACAAGCCAGTTGCTCTATGGATTACCAGAGAAGGAGCATGAAGGAAAGCATGAGTATTTCATGCAGGCAACCGACAAAGGAGGTCTCTATGCGATAGATGCCTTTGAAGTCCGTGTCAATCAATGGGGAAATGGTGTAAAGTCACCGGTGGTGTTTACTGCTGTGTTTGAAGGCGATGCACGTACTGTTACCAATGACATTCACAAGAAGATCCTTCTCGTCAAGAAACTGGCCCAGTCTTTCGGTGATCGCAACAGTAGCACCGTTACGCTGAAGAACATCACAAAGGGCTCTATTATAGTGGAATGGACCAACAACAGCCTTCAGCAAAACCCCTGCCCGAAAGAGCAAATACAGCAGCTGAGCAGAAAAATCTCCAATAATGAGGGTAGACCCACACCGCAATTCATGCATGTTATGGAACCAGATTTCAAGGCCTTAAATATCACTGTCAGAGGCACAGCAAGCTGTCGCAACTTCATGTTTGTCCCATTGGGCGAGATCCCAGATCCGACCGCCTCTCCTGTTACTCCCGCTGTGGGCGCGGGAAGACAGAGCAACGATGATGTGTATCTTCACACCGTCATACCGGCAGTGGTGGTTGCAGCAATTCTGCTGATAGCCGGAATCATCGCCATGATTTGCTATCGCAAGAAGCGCAAGGGCAAGCTGACCATCGAAGACCAAGCGACTTTCATCAAGAAAGGAGTGCCCATTATTTTTGCAGATGAGCTTGATGACTCTAAGCCACCCCCATCTTCCAGCATGCCCCTCATCCTTCAAGAGGAAAAGCCTCCGCTTCCTCCACCAGAGTATCCCAACATGGCTAGTCCAGAGACAACACCTCTGAACCAGGACCTTTTGGGAGAGTACACACCTCTACACGATGAGGATCCCAATGCCCCTCCCTACCAGCCTCCACCACCCTTCTCTACGCCAATGGAGGGGAAAGGATCCCGTCCCAAGAACATGACCCCGTACAGATCTCCACCCCCTTACGTGCCACCCTAATGTTTGCCGAAACCTCTGGAGCAGGAGGATGGGGAACTTTTGTAGTTCCACACCAGTGTGTTGTTTCTTTGCATTATGGGATTTTTAGAAGGGGGGGGAGGGTGTTGCAAACTGGGAGTTGGGTTTGAATGTGATGGGATGGGATAATTTTGTTAAACTGGACTCTTAAGGAGATGTGGGAGGGTGGGGCAAGTGGATAGTCTGCAAAGGACAGCAAAAACAACCTCAGCCTCTGACTACTCTGGTTATTGCTAAACTGTTGGGGATGTACCCACCAGTCCTGGCGCTTTTGTGTCTAGATGGGCTTTTTTGACTAATTATTGGTTTTGTTTcgattttaattttcttttcttttttattttattttgtttcacgttttttttctgactcAGAATCAAAACTCCTTGCCTAACAGCACTCTTTCTATCTTCTGAATTCGTTAATCTTGAATAATATAAGCGGACAATAAAGCTGACTGCAGGTGCAAAAGGTTTCATAGAGAAATTCAATAACAGAAGGGGAATAAAAGAACGGCCTTGAGGGACTTGGACAGCCATGCAGACAGTTCTGTGGGATGTCGATTCATTATGGTTTTGCCTTTTAACACgaaattaaactgtttttattgttcttcaCATGTCTAGTTAAATCACTACAAGAGGTAGCCAAAACGAAAGATTTGTTTAATCCACTGTATATTTGAAAGTTGTTATGCTAGATcgtctttaatttttattatatattttattacttttttttttaagtattacaCTGAGAGAAACACTATTTTCCACCCCTCAAATGCTTAAAACCTATTAAATCACTGTGTGAACATGTCCAAGCGTGTGTTCTGACTTGAGATTTGTGCTGTATAGTTTCTCGCCAGCCATGTGTAACTTTCGGAGGCGGTAATCTCATGAGTGAGTCGTCTATGCAGATTCTGCCTTTGACCTGACAGGCCGGAGCCCGGTATTGATCTCACTTAATCATATTTCCCATAGGCCACGAAGAAATGTTATGATTTAATTGGTTGTGCAGGTTGACGGGGTCTTCGCATTCTTAATTCTCTCGTAAGACAGCAGGAACCGTGTTCAGCACCCTCAAGTCAAAACCACCAATATACTGTTTCACCAGTTAGACTCAAGCTACTGACAGTCATTGAGAAGGATTGCTCAATTTCAAAGACTTGATTTAATCAGAACAAGCTCGGGTTTCGGAtgatttgtagtttttgtttcttgctttttcttttatttttatgttatttttttgtttttaatatataaatatatatatatttcagtgatGATTATGGAGTATATGCCTTGGATCCACTcgaaataattcaaaataaagacTGAAGATTTTGATAATGGTGA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0016203 muscle attachment biological_process
GO:0043113 receptor clustering biological_process
GO:0033292 T-tubule organization biological_process
GO:0042383 sarcolemma cellular_component
GO:0016010 dystrophin-associated glycoprotein complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0043236 laminin binding molecular_function

KEGG:

id description
K06265 DAG1; dystroglycan 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227383 lncRNA upstream 235054 16805182 ~ 16805608 (+) True G153583
TU227369 lncRNA upstream 281082 16759145 ~ 16759580 (+) True G153569
TU227368 lncRNA upstream 282535 16757795 ~ 16758127 (+) True G153568
TU227279 lncRNA upstream 473992 16566052 ~ 16566670 (+) True G153504
TU227275 lncRNA upstream 484052 16554933 ~ 16556610 (+) True G153501
TU227415 lncRNA downstream 2547 17072514 ~ 17072936 (+) True G153610
TU227465 lncRNA downstream 349757 17419724 ~ 17419944 (+) True G153645
TU227470 lncRNA downstream 371906 17441873 ~ 17442179 (+) True G153647
TU227476 lncRNA downstream 401933 17471900 ~ 17472846 (+) True G153653
TU227477 lncRNA downstream 403274 17473241 ~ 17474600 (+) True G153654
XM_043223197.1 mRNA upstream 283732 16752903 ~ 16756930 (+) True rbm15b
XM_043223198.1 mRNA upstream 287908 16750713 ~ 16752754 (+) True manf
XM_043222467.1 mRNA upstream 290734 16600689 ~ 16749928 (+) False dock3
XM_043223130.1 mRNA downstream 283850 17353817 ~ 17369897 (+) False srfa
XM_043223128.1 mRNA downstream 283895 17353862 ~ 17369897 (+) True srfa
XM_043223129.1 mRNA downstream 283913 17353880 ~ 17369897 (+) False srfa
XM_043223415.1 mRNA downstream 301188 17371155 ~ 17388079 (+) True rnf13
XM_043223414.1 mRNA downstream 301189 17371156 ~ 17388079 (+) False rnf13
XR_006247623.1 other upstream 294587 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 541249 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 654486 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 890818 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 893525 16147065 ~ 16147137 (+) True trnaa-agc_27
TU227461 other downstream 345486 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 856384 17926351 ~ 17927244 (+) True G153741

Expression Profile