RNA id: XM_043222375.1


Basic Information

Item Value
RNA id XM_043222375.1
length 2507
RNA type mRNA
GC content 0.45
exon number 14
gene id mcoln2
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12154522 ~ 12164257 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTATTTAGTAATTGAGCGATCAAGGAACGCTCGCGGCTGGAAACGCGTTCAGTGTGGAGCGACAGGTGGCATGGAAATGTCAGATAGGTACTGCCAGGGCGCCAGAGTCGACTTCTCGTGCGTCTCCATCGCCAGCGATTCCACGACAGAGGAAATACTGAGAGATGACTTGAGGTTTTACTTCATGAGCCCCTGTGAGAAGTATAGAACCCGGCGACAGTTACCATGGAAATTAGCGGTgcaaattttgaaaatattcatgATTACGCTTCAGGAGGAGAACCTCATGGCCTTTAAGAGTTTGTTTCTGAAGGGCTACAGTGGTGTGGATGAGGATGACTACAGTATCGCGCTCTACACCAAACAGAGTGTTTATGACAGTTTACACTACGTTATAGATCagTATTCCCAATTAGGAAACCTGTCTGTAGGTCCTGTTAGTTACGCTGAAGAGAATGCAAAGTTTCTGCCCTTGGTCATCTGTAAGAAGAGCTACAAGAAAGGCAGCGTTGAACCGTCCGAGGAAGCTTACGACATTGATGCCGAGCTTGAAACAGTGTGCTTGAGTCTTGATCCAGAGTCCACTAAAACATGGAAAATGAACAATGCTTCAATTTTTCAGCTGGATTTCTATAGGCTTGTCGATATTGAGATCACTTTCGTGCTCAAAGGAATCAATTTGCAAACTGTTCGTTCTCATGAGCTCCCAGActgttattcatttttcataaagATTCTCTTTGATAACAGCTGTCACAGTGGGAAGGTGAAATTGACTCTTGATTTTGACGCTGTTAGTAGTGTGTGCAAAAACTGGAAGATTTCAGGAACTGCTCAAAAAAGCACACACTACCTCCTGATCTTTGACGGCTTTGTTATTGTAATGTGTCTGATCTCTGCAGTGCTCTGCACTCGCTCCATTATACTCGCTGTGAGGTTACTTCAGcGGTTTTCTAGCTTCTGTCTTGAGAATTATAACCGGAAAGTGTGTGAAGATGATCAGAGGGAGTTCTTGAATGGCTGGTACATCTTGGTGATCGTCAGTGATATTTTGGCCATCATTGGATCCATACTAAAAATGGAAATACAGGCTAAGAGCATGACTAATTATGATGTCTGCAGCATCTTTCTGGGAACATCGACTCTAATGGTCTGGGTGGGCGTCATAAGGTATCTGGCATACTTCGAAAAATATAATGTGCTTATCCTCACTATGCGAGCAGCTTTACCAAAAGTGTTGCGCTTCTGCTGCTGCGCAGGAATGATCTACCTCGGCTACACCTTCTGTGGATGGATTGTTCTGGGACCCTACCATGagaagTTTGAAGGTCTGAGCCGTGTGGCGGAGTGCCTCTTCTCTCTGGTCAACGGGGACGACATGTTTCCTACGTTTGCGGAGTTCGAGCAGAAGAACACAATGGTGTGGCTGTTCAGCCGCGCTTATCTCTACTCGTTCATCTCGCTCTTCATCTACATGGTGCTCAGCCTCTTCATCGCCCTCATCACAGACGCTTACGAGACCATCAAGGGTTACCAAACGACAGGCTTCCCCATGACAGAGCTCCAGCGGTTTCTGATGGGGCAGAAGGAGGGTTTCCCCCTCCAGGGGCAGGAGGGGGTCGGCACAGAGTGTGGTGAAGCCCAGACCGTCCTCCCTTCAGTTATGCTGTGTTGCTGCAAAAGGGTTCCCAAAGACGACGCCATCATTCTCATCAGCTGACCATTGCGACCGATCCCGTTTCGAAATCTACTTCAAACTGCAATGGATTTGCAGCTTATTAAGGGAAAGATTATGCGAACAAGTTTACCGCTCCATGTAACGCGGTTCACGTACTACACAGGAAGCGAGATCTTCCGCGAACATGCCAATTTCATTAGGAACCGGTAAGACCTGCATTAGCAAACGGATAAATGCCAAATCATATCTGCCAAAGTGCACTACAATGCAATCAAGAGCAAAAAATGAAGCGTTTTGCGGGTCATATGGCAACCGCAGATGACGTCGGATGGATTTTGATGCGCAGTCTGTAAAATTATCCCCGTTCAATGTTGGATAGTAGAGGAAATATCTTCTATAATATTATGTAGATTGTCTGCTCGCGTTTTACATTAGAGAGTTGCTTCGAATTACACGCTTGGGTTGATTTTTGTATCGGCCCTTTTGGCACGTTACCTCAAAGGTgtttagaaatatttcaaaagataAAGTTTCTTAATGCTGCCCTCAAATATGCGAAGTGCGTAAGGAATGACTGTAATGCGTATGAGCAACACCGGAGTTCTCAGAATGCGTGGTTCACTCAGCCGACTTTTGTCTTGGTGGAGATGATCATACATGATGTGAATCACGGATCAttatcgtcatcatcatcatcagcccACAATTATCAGGGAAGGCAGACAAGTTCCTACGTGACTTGCTTAGTAAGCACTTGCTCACTGGGAGAAAGACCTTGGGTGAGGGAATGGaagataataaaaagtattttgtatttgcaaACTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224954 lncRNA upstream 106257 12045852 ~ 12048265 (+) True G151999
TU224891 lncRNA upstream 147940 12006268 ~ 12006582 (+) True G151976
TU224886 lncRNA upstream 161722 11992590 ~ 11992800 (+) True G151972
TU224834 lncRNA upstream 286981 11867082 ~ 11867541 (+) True G151936
TU224830 lncRNA upstream 319419 11826565 ~ 11835103 (+) False LOC122327134
TU224975 lncRNA downstream 22010 12186267 ~ 12188924 (+) False LOC122327107
TU224920 lncRNA downstream 41567 12205824 ~ 12218206 (+) False LOC122327127
TU224926 lncRNA downstream 50216 12214473 ~ 12250463 (+) False LOC122327127
TU224981 lncRNA downstream 52190 12216447 ~ 12216846 (+) True G152015
TU224917 lncRNA downstream 62976 12227233 ~ 12265692 (+) False LOC122327127
XM_043222373.1 mRNA upstream 2498 12146360 ~ 12152024 (+) True clcc1
XM_043222257.1 mRNA upstream 10086 12131968 ~ 12144436 (+) True wdr47b
XM_043222282.1 mRNA upstream 24207 12125493 ~ 12130315 (+) False LOC122327103
XM_043222376.1 mRNA downstream 125 12164382 ~ 12173298 (+) True lpar3
XM_043222287.1 mRNA downstream 11430 12175687 ~ 12189006 (+) True LOC122327107
XM_043222288.1 mRNA downstream 11431 12175688 ~ 12189006 (+) False LOC122327107
XM_043222289.1 mRNA downstream 13048 12177305 ~ 12189006 (+) False LOC122327107
XM_043222310.1 mRNA downstream 24983 12189240 ~ 12196579 (+) False LOC122327127
TU224831 other upstream 321148 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 330467 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 830582 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1232594 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224351 other upstream 1317157 10816135 ~ 10837365 (+) False G151620
TU224914 other downstream 74525 12238782 ~ 12265692 (+) False LOC122327127
TU225002 other downstream 129143 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 180949 12345206 ~ 12345750 (+) True G152043
TU225015 other downstream 180949 12345206 ~ 12345750 (+) False G152043
TU225049 other downstream 245049 12409306 ~ 12423922 (+) True G152065

Expression Profile