RNA id: XM_043222411.1


Basic Information

Item Value
RNA id XM_043222411.1
length 2233
RNA type mRNA
GC content 0.41
exon number 12
gene id trmt13
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8752424 ~ 8757018 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatataaaaataatatagtttcaaaatatatttatatacacacagcacacattatttaaataaaaacttttattttgcatgctgtCATAAAGATTGATTCATTggtaacattttgtcatttaaagctAACTTAATGTTCTTCCTCTGagtttaggctttttttttgtctccagTATGAGCTCCACATCTTCACACGATACGAGCAATAAAAGCCTATGAAAGATGCTCAacgataaacaaaaaaacaaacaaacaaacactgactATCAATTTTAACAGGCCAGGCTTCACAGGGTTAATACGTCGGCCTCTGAAGCAacaaagcaggaaaaaaaagtcttggTATGCAGATTAACATCGTCCCTTTTAACGCAATAACCGTTTGGTGAACCATAAAGCTTTCTTTGTGCTGAATGTAGGTCAGTACGCTAAGAGAAACGTGTAATATATACGTTTAAGAGACAAAACACAGCTGAacggaataaaataaaaaggttaaatattAAACCGCGTGCGTTAAATCCCAGAAGCTGAGGTAACCGTCGTTTATTGCCTGGCAAGAACTAGGTTATGAAAGCTTTAGTTTGCCGATAACGGCTGTCGAAGCTCGAGGGAGTTTATCGAGATTAACTCGTACGGCGAACAACCCGTCACGTGACTTTCTGGACCTCTTAACACTTGATGTACAAACTTGCCTGATCAAAACATCACTCGATCAACCGGTCTTCATCTGTTATCAAAGACAGTTTCACTGACTATTCACTGAATCCTTCGGTTATTAGACCTTCACCAGGATGTGGGTTTATCACTTAATTAGcGCTGTTGTTTATAgctcttattttgaaatggcTCGCGGAAGTTCGTTGGTCGCGTCATCAGTATGGAGGAGTCTGTGGCGGACGGCGTGTCGGCGCCTTTACCCGGGCGATGTGCTTTTTATgtagcaaaaaagaaaagatactGCAAGATGCTTGTTGGACGTGGGAAGACCTTATGTGGAGAACACGCAAACGCTGGTGAAGAGAGTGAGAAAAAACGAATACCCTGTCCTTTGGACCCGAAACACACTGTATTTGAAGATAATTTGGCTAAACACCTGAAGAAATGTAACTCTAAGGAGAAACCAAAacctatttattataTGAAAGACATCAATGCAGGTTCTGGAAGTGAGGATGAAACCAAAGAGGAGATAACCATCGCTGAACGATCTAAAGAGGAACTGGATGAGCTAATCATCAAACTCAAAACTGCATTGAAAGGTCTAAATACCAAACTTATTGAAAACTCACTGTCACATTCTGCTCTACACGAGCCTCTAAATGACCCAAAGAATGGAGATTCTGCCTTTAAACACCTCAAGCAACAGGCCTCGATTCTTGGAAACATGGAGCTTTTGGAACTGCTCAAACCAAATAGATGCTACATAGAGTTTGGAGCAGGGAAGGGAAAACTGTCCCACTGGATTCACATTGCTCTTAAAGAAGCTGAAAATGTCCATTTTTTACTTGTGGAAAGGTCCAGTACTCGCTTTAAGGTAGATGGCAAGCACAAAAATGCAGACTCAACTTTTGATAGGCTTCAGGTTGATATTCAGCACCTTGATTTACGGAAGGCCCCTCTTTTGAGAGAAAAAGGACTTCCTGTTATTGGTGTTGGGAAGCACCTGTGTGGTGCAGCAACTGATCTAGCCCTTCGTTGTTTATTCGAGCACAACTGCTCCGAGGAAGATGATGAACCTCCAACCAAGCGTGTAAAACTCCATCAGAATGAGGGTGCTTGTGGTGATATTAAGCCTGCTTCCTCAACCAAAGGCCGGGAAACTGGTAAAAAGCTCATAGTGTCAGGACTGGCTATTGCGCTTTGCTGCCACCACCGCTGCGACTGGAGACACTATGTGGGAAAAGAGTTCTTCAGGCAGAAAGGTCTTGGACCGGAAGAGTTTGCTGCCTTTCAGCGCATGTCGAGCTGGGCCACATGTGGGATGAGAAAATTTGCCTCTAAGATAAGAGAAAAACCAAGTGAACTCAAAACGGATGAAGAGGAAGAGCATGAGATGAGCGAAAAAGCTTTACCTGATACCCTCATTTGATGTCAGTTGAAGATCGGGAACAGATCGGATGGCTTTGTAAACGTCTGATTGACCATGGCAGATTGTATTACCTCCAGAAAAAAGGCTTTGAAACCAGCCTGAAATATTACACAAGCAGAGACGTTTCGTT

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223511 lncRNA downstream 145504 8600350 ~ 8607426 (-) False zbtb37
TU223514 lncRNA downstream 145504 8600350 ~ 8607426 (-) False zbtb37
TU223507 lncRNA downstream 253569 8499126 ~ 8499361 (-) True G151029
TU223485 lncRNA downstream 283678 8468471 ~ 8469252 (-) True G151015
TU223490 lncRNA downstream 332190 8419634 ~ 8420740 (-) True G151016
TU223606 lncRNA upstream 50090 8807108 ~ 8808535 (-) True G151086
TU223638 lncRNA upstream 158883 8915901 ~ 8917143 (-) False G151110
TU223639 lncRNA upstream 158883 8915901 ~ 8917143 (-) True G151110
TU223641 lncRNA upstream 191770 8948788 ~ 8949027 (-) True G151111
TU223642 lncRNA upstream 192598 8949616 ~ 8950059 (-) True G151112
XM_043223143.1 mRNA downstream 13687 8734158 ~ 8739243 (-) True rtca
XM_043223063.1 mRNA downstream 27550 8696000 ~ 8725380 (-) False cdc14ab
XM_043223060.1 mRNA downstream 27551 8687091 ~ 8725379 (-) True cdc14ab
XM_043223801.1 mRNA upstream 16847 8773865 ~ 8785783 (-) True ttc39c
XM_043223470.1 mRNA upstream 29740 8786758 ~ 8800742 (-) False lama3
XM_043223469.1 mRNA upstream 29740 8786758 ~ 8800742 (-) True lama3
XM_043223473.1 mRNA upstream 29740 8786758 ~ 8797893 (-) False lama3
XM_043223474.1 mRNA upstream 29740 8786758 ~ 8797893 (-) False lama3
XR_006247718.1 other downstream 1134532 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 1134532 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1697728 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 1839372 6906000 ~ 6913558 (-) True G150492
TU222746 other downstream 1883384 6867843 ~ 6869546 (-) False mfsd6a
TU223633 other upstream 127103 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 256530 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 256530 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 256532 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 256532 9013550 ~ 9141867 (-) False nfia

Expression Profile