RNA id: XM_043222434.1


Basic Information

Item Value
RNA id XM_043222434.1
length 1472
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC122327224
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15879254 ~ 15886245 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTGCACAGAGAGGTCTGTTGTAAGAAAGATTTCTTTTTGACAAGCAGGAAAGAGTTTTAGTGACAGATCAAAACAGGTGCTTGTGAACTGAACTCATAATGAGAGTTACTGTAAAACTCCTCGGATTTGGTTTTTGGTTGCTTTACTTCGATTTTGCGTGCTGTCAAGAATGTCGTCGAGATGACATTAAATTTACTAACACGGAATCGGTTGCAAAAGCTTCATACGCTGATGGCGAAACAATGAAAGTGAACTGCATTACGGGTTTTACTGGCTTGTATAAGTTAAAGTGTGAAAAAGGAGAATGGAAGAAATCCATTCAACGACCATGTGCAAAGAGAAAATGCGGTCACCCAGGCGACCTACAACACGGTGATTTTAAACTTGTGGAGGGGACGGAGTTTGTTTTTGGAGCAACGGTGGCTTATTCTTGCCAGAAAGGGTATGAAATGACGAGCAGAATCAATCAGCGTACCTGCAGAGCTCAAGGATGGGACAATGCTGTTCCCATCTGTGAGGTGGTAAAATGTCCAGCCGTTTACACCGAAAAGGATATAACTGCGTCGGGGGACACAGAGGAGGGAAGTTACGGTGATATTATTCACTTTGAGTGTGCATCTCCTGATAAAATGCTAAATGGAAGTAGTGAAATTCACTGTGAAGAGACTGGAGAATGGAGTGACGTTATTCCAAAGTGCATAGAAATAACTTGCACAGCCCCTGTCATATCACATGGAAAGGTTGTTGAGCCACGGCCGAAATACCTGAAAAATtccatattaaaatacaaatgcgATCCAGGCTTCAAGGCCAAAGAGGGAATCCCAAGATGCGCTAAATCTGGCTGGACTGTGAGCCCAGAATGTGATGAAATAACTTGTGAGCTGAAGTCAACTTCATTTGGAGTGCAAAAGATCAACCCGAAGGGAAAAACAATTTTCAGAGCCGGAGAAAGTGTGGAAATCACCTGCTCTGAAGAATACTTTATCTTTGGTACAAAAGAAGCCAGCAGATCTTTTACATGTCGATATAATGGCCAGTGGGACAATAAGCCTGCTTGTGAAGAGATTACATGTGAAGATCCACGCGACTGGCGTGTGTCTAAACCATACTACTGGCAAATTAAGAAATTTGGAGAAAAACAGTCTTACCGTTGTGAGTCTAGATATCGTGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGAAACCAAAACCACTGTGTGCTGATATTACATGCACAGCTCCTGTCATATCAAATGGAAATGTTGTTGAGCCACGGCCAGAATACCACAAAGATGccatattaaaatacagatgTGATTCAGGTTCAAGCTCAGAACTCCCGGGCCATGTTCTCAACTGTGTTGCCAAAGAGGCCAGTTTGGGACACGGGGACCTTGAGGAATCAAACTTTGTAAGCGCTCACATGTTGACCAGACACAGCCATAGCCTAATGGATTGA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226825 lncRNA upstream 26737 15832779 ~ 15852517 (+) True LOC122327891
TU226835 lncRNA upstream 26820 15832779 ~ 15852434 (+) False LOC122327891
TU226875 lncRNA upstream 42500 15835260 ~ 15836754 (+) True G153236
TU226854 lncRNA upstream 43817 15832779 ~ 15835437 (+) False LOC122327891
TU226837 lncRNA upstream 43817 15834027 ~ 15835437 (+) False LOC122327891
TU226822 lncRNA downstream 4793 15891038 ~ 15893138 (+) False LOC122327891
XR_006247733.1 lncRNA downstream 4839 15891084 ~ 15893130 (+) False LOC122327891
TU227008 lncRNA downstream 94877 15981122 ~ 15981346 (+) True G153320
TU227009 lncRNA downstream 96347 15982592 ~ 15982822 (+) True G153321
TU227020 lncRNA downstream 192028 16078273 ~ 16078868 (+) False LOC122327825
XM_043223394.1 mRNA upstream 126767 15735901 ~ 15752487 (+) True aspm
XM_043223766.1 mRNA upstream 167168 15623095 ~ 15712086 (+) False dennd1b
XM_043222435.1 mRNA downstream 14887 15901132 ~ 15938182 (+) True LOC122327226
XM_043223557.1 mRNA downstream 57488 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA downstream 57488 15943733 ~ 15955960 (+) False LOC122327890
XM_043223458.1 mRNA downstream 191336 16077581 ~ 16078895 (+) True LOC122327825
XM_043222436.1 mRNA downstream 212486 16098731 ~ 16099807 (+) True LOC122327228
TU226683 other upstream 662312 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1187446 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1416594 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1836733 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1912029 13967107 ~ 13967225 (+) True LOC122328230
TU227010 other downstream 118319 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 236195 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 240291 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 241665 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 243041 16129286 ~ 16129358 (+) True trnaa-agc_21

Expression Profile