RNA id: XM_043222436.1


Basic Information

Item Value
RNA id XM_043222436.1
length 1077
RNA type mRNA
GC content 0.37
exon number 1
gene id LOC122327228
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16098731 ~ 16099807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCAGTGACAAGGATCAGGGACCTAACTGACAAGCATCTTCACACAGAGTCTACTCTTCAATATCCATCCATCATGGAAGTGTCTGATTGGGAAGTGACAAATGTGGACAATCAAACAGTCCGATACTGCTTTCCAGGCAACAATTTGTCTTGTACCAAAAGTATCAGACCAGAAGCGAAGTACATTGttgtgtacattttcatttctgtaataTCAGTGTTCACTGTGTTTCTGAACTTGTTGGTGATTGTCTCCATCTCACACTTCAAGCAGCTCCACACTCCGACCAATGTGCTGATCCTCTCTCTGGCCGTGGCTGATCTGATCGCAGGACTGATTCTCATGCCAGTGCAGGGAATGAAACTCATTGAGCCATGCTGGTACTTTGGAGAAATATTCTGTTCAATATTTCCTCTTATTCTCTATGTGGTTGTTACAGCATCTCTTGGAAATTTGGTTATAATATCCGTGGATCGATACATTGCTGTGAATGACCCTTTGCGATATCCACTGAAGGTCAATACTAATAGAGTTGTTATTTCCATTGTAGTAAACTGGttattctctttcttttattcattttatctaTTGTATGAGTTTTTAATCAATCCAGAAAGAACCCACTCATGTATTGGAGAATGTGTACTTTCTGTCAAGTTGGAATATCTAATATTAGATTCCTTTGTTTGTTTAGTGGCACCTTGTTCAGTAATTGTTTCTTTATATgtgaaaatctgttttgtagCAAATTATCAAGCTAAGCATTTAAACTCGGTTACAGACAAAAAGGCTAAATCAGAAAAGAAGGCTGCAAGAACCTTAGGGATTGTAGTCCTGGTTTATCTTCTTTGCTGGATGCCATACTATTTAGTTACTCTTTCCCTTGGGCATGATGAAAATGATGCTCTTATAATTAACGTAATGTATTGGATTTTATGCTTGAATTCCTGCATGAATCCACTTATCTATGCAATGTTTTATCGATGGTTTAGGCTAtcagcaaaatacattttgacactgaaaatatttgaacCTTCATCACAGTACTTCAATCTGTTCCCAGAAGAGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227020 lncRNA upstream 19863 16078273 ~ 16078868 (+) False LOC122327825
TU227009 lncRNA upstream 115909 15982592 ~ 15982822 (+) True G153321
TU227008 lncRNA upstream 117385 15981122 ~ 15981346 (+) True G153320
TU226822 lncRNA upstream 205593 15891038 ~ 15893138 (+) False LOC122327891
XR_006247733.1 lncRNA upstream 205601 15891084 ~ 15893130 (+) False LOC122327891
TU227040 lncRNA downstream 63576 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA downstream 63576 16163383 ~ 16164196 (+) False LOC122327131
TU227043 lncRNA downstream 71086 16170893 ~ 16171468 (+) False LOC122327131
TU227077 lncRNA downstream 150633 16250440 ~ 16250973 (+) True G153364
TU227140 lncRNA downstream 203924 16303731 ~ 16305650 (+) True G153399
XM_043223458.1 mRNA upstream 19836 16077581 ~ 16078895 (+) True LOC122327825
XM_043223557.1 mRNA upstream 142421 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA upstream 142771 15943733 ~ 15955960 (+) False LOC122327890
XM_043222435.1 mRNA upstream 160549 15901132 ~ 15938182 (+) True LOC122327226
XM_043222434.1 mRNA upstream 212486 15879254 ~ 15886245 (+) True LOC122327224
XM_043222437.1 mRNA downstream 53335 16153142 ~ 16155551 (+) True LOC122327230
XM_043222314.1 mRNA downstream 63582 16163389 ~ 16171629 (+) True LOC122327131
XM_043222315.1 mRNA downstream 63582 16163389 ~ 16171629 (+) False LOC122327131
XM_043223165.1 mRNA downstream 133800 16233607 ~ 16237021 (+) True LOC122327679
XM_043223756.1 mRNA downstream 141356 16241163 ~ 16244542 (+) True LOC122328055
TU227010 other upstream 63116 16004564 ~ 16035615 (+) True G153322
TU226683 other upstream 881789 15212458 ~ 15216942 (+) False kif14
TU226184 other upstream 1406923 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 1636071 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 2056210 14040724 ~ 14042521 (+) False LOC122327219
unassigned_transcript_2545 other downstream 22633 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 26729 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 28103 16127910 ~ 16127982 (+) True trnaa-agc_20
unassigned_transcript_2551 other downstream 29479 16129286 ~ 16129358 (+) True trnaa-agc_21
unassigned_transcript_2553 other downstream 30826 16130633 ~ 16130705 (+) True trnaa-agc_22