RNA id: XM_043222437.1


Basic Information

Item Value
RNA id XM_043222437.1
length 1771
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC122327230
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16153142 ~ 16155551 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCACCAaggtcatatattttaaaattacattaaatttcaaTATCACAATGTTGTTGTGCTGTTTCAATACACCTCATGCTCTTCTGCTGTTGTTTCCAGCCTGCCACTGCTACTTTATCACAGGCCACTGCTGCACCTCCACAATCTGAGGCTTCAGACACGGCTCCTGCCCCACGGTCATTCCTGAGGCCCTCTTCTACTTTATCAATGtTCACTAAATCACGGTATAGTGGGTCACAGTTGTCTTCACTAAAGCCCAATTTAGTAGAACGGAAGACCCCCAGCCCTTCTCCATCCTCTGTGAGGACCCCAAGTGCTTCTCCTCCCAGCCCCTCACCTTCTCCATCCTCTGTGAGGACTCTAACCGTGGCCACTGTGAGAACCCCTTGCCCTTCTCCATCCTCTGTGAGGACCCCAAGTGCTTCTCCTCCCAGCCCCTCACCTTCTCCATCCTCTGTGAGGACTCCAACCGTGGCCACTGTGAGAACCCCTCGCCCTTTTCCATCCTCTGTAAGGACGGcaagctcttcttcttcctctccgAGACCTCCCAGCCCATCCTTACTGCAGACCCACGTTCCTGCTCCATTCTCTGAGGAGCCTAGAAGAGTCCAGCCAACCCCTGCCGAGGACTTAGCTTCAGTCAGGCTACCAGTTGAATTAGGCAAGACCATCCCTGTGCAGGACCAAAGGTGGATTGccaacactttatttcactCTGGCAAGCTGCGGCCAGATTTGAAGCTGTGGTATGAGCCTCCCATCCCGGCCCTCATTTACCACCAGACACCAACACCTGACCGGTTCTTTACCCATCGGCTAATGGTGTGGATGCCCTACCACCTGTGGAAGGTGACGGTTCACTGTCCGGCTTGTAACAAGAACCTAACAGGTTATGGTGTCCACAAAGGGGCCAGGAAGGTCCTGGATATTGACAGGTACTACCTGCTGGTGACAGAGACACTCAGGTGTACTGTGTGTTCTCAAAACTATCTGTCAACAAGCCAGACTGTCCGGGACCAGCTCGACCTGCCGCACCAGAAAATGTTCCGGCTGATTCTGACACGCAAgtATGCCTGTGACATCCGTGTCATTAGGCTGCTTCGGGACCGGACGCTAGGCAACAGTCCAGCTCGATTGGAGCGGCAGTTGAAAGAGAACCATGGAGAGGAATGGCTGAATCGGCTGGCACACTATCTTGGGGAGTGTGCTGACTTTGTCGATCGACCCAGCCTGTATCCGGTGGTCTGCCAGGAGCCTCCAGAGCCAATCGACATTCCCACCAGTCGTTGGCTGCTGTCAGTATACGGCAGGGATATCCTCTCCAGAATTGAGCATATAAAAGCCAGCATCACATCCATCTTTGGCAACATCTTAAAGATGGATTCCACAAAAAAGATCACAAAGAAGCTGGCCGGCCATGGACGGGGGACAGCACTCTGGGTAACCTCCATTGGAAATGAGGTTGGCCAGATAGTGACCAGTGTGCTGTCAGTGCAAGAGGGGCCAGGACTGAGCAGAATGGTGGCTGGTGTAATGGAGCGCTACAGCAAGGCTGCCATTCCACCACCAGTGCTGCTTTATGTGGACTGTGGCTGCTGCGTGAGTGATGGAGCGACAAGCAAGCTGCAGACCAGGTTTGGGGAGTGGCCAGACCTTCACATACGGCTGGACATCTGGCACTTTATGAGGAGGCTGGCCGTGGGCTGCACCACCGATGCCCATCCTCTATCCCACCTTCATGGGATGCCTGTCAGCCTGCATTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227020 lncRNA upstream 74274 16078273 ~ 16078868 (+) False LOC122327825
TU227009 lncRNA upstream 170320 15982592 ~ 15982822 (+) True G153321
TU227008 lncRNA upstream 171796 15981122 ~ 15981346 (+) True G153320
TU226822 lncRNA upstream 260004 15891038 ~ 15893138 (+) False LOC122327891
TU227040 lncRNA downstream 7832 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA downstream 7832 16163383 ~ 16164196 (+) False LOC122327131
TU227043 lncRNA downstream 15342 16170893 ~ 16171468 (+) False LOC122327131
TU227077 lncRNA downstream 94889 16250440 ~ 16250973 (+) True G153364
TU227140 lncRNA downstream 148180 16303731 ~ 16305650 (+) True G153399
XM_043222436.1 mRNA upstream 53335 16098731 ~ 16099807 (+) True LOC122327228
XM_043223458.1 mRNA upstream 74247 16077581 ~ 16078895 (+) True LOC122327825
XM_043223557.1 mRNA upstream 196832 15943733 ~ 15956310 (+) True LOC122327890
XM_043223556.1 mRNA upstream 197182 15943733 ~ 15955960 (+) False LOC122327890
XM_043222435.1 mRNA upstream 214960 15901132 ~ 15938182 (+) True LOC122327226
XM_043222314.1 mRNA downstream 7838 16163389 ~ 16171629 (+) True LOC122327131
XM_043222315.1 mRNA downstream 7838 16163389 ~ 16171629 (+) False LOC122327131
XM_043223165.1 mRNA downstream 78056 16233607 ~ 16237021 (+) True LOC122327679
XM_043223756.1 mRNA downstream 85612 16241163 ~ 16244542 (+) True LOC122328055
XM_043223757.1 mRNA downstream 85612 16241163 ~ 16244542 (+) False LOC122328055
unassigned_transcript_2576 other upstream 3298 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 6005 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2570 other upstream 7390 16145680 ~ 16145752 (+) True trnaa-agc_26
unassigned_transcript_2563 other upstream 14220 16138850 ~ 16138922 (+) True trnaa-agc_25
unassigned_transcript_2559 other upstream 16950 16136120 ~ 16136192 (+) True trnaa-agc_24
TU227165 other downstream 161910 16317461 ~ 16386176 (+) False rpl32
TU227194 other downstream 338151 16493702 ~ 16499413 (+) True G153432
XR_006247623.1 other downstream 445081 16600632 ~ 16746075 (+) False dock3
TU227461 other downstream 1259902 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1770800 17926351 ~ 17927244 (+) True G153741

Expression Profile