RNA id: XM_043222439.1


Basic Information

Item Value
RNA id XM_043222439.1
length 6913
RNA type mRNA
GC content 0.49
exon number 37
gene id frem1b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9198024 ~ 9223536 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTGAGTAGTAGAAACCTTTGGAACTGGTCTGCACATTTCCTGTGTGAGGAGCTCGAACTTTTCCTGCCCTTTTTCATGTCTTTTCCTTCACTTTGCTGGGTTCTGCTATGATTCAAGCAGGGGGGCAGCTGAGGGTAAACCTCTGCAGTTTGAGGAGGGCTGAGCTGTTCTGTTAGTCTACACACACTGAAGGAACTACAGGCCAACTGTGGATTCAGCTGGAGCATACTGAAGGAAATGAGAGCAAGACAGTTCATCTGAAGCGAATAACCTTGGATAGCAAGCAACTGAGCAAAAAAATGGGGGTGGACATCTTGGTTTTGACATTGTTCACCTTGAGTCACCTGTGGCCACATGTCCAAGCTTCAAGTCTAGTTCGGTTAAACACAGGGCTTCGGGTAGCCAGAGGCCAGTCGGTGTTTGTCACGGCTGGTGAACTTCAGTTCCACACGGACAGGGTTTCTGAGGCCTGTAAGGTCGAAGTAGTTCTCACCGAGCCTATCACACAAAGAGTGGGGAAACTCACTCCTCAGGTTTTTGATTGCCAGTTCTTTCCGGATGAAGTGAAATATGTTCACAATGGCAGCCCACTTCTAGAGGAGGACACTGTCATGTTGAGGGTCTACAGGTTTACAAAAACTGATACTTTTGTTGAGACTGTGGTGCTTAGGATACATGTAGTAGAACCACAAAGGAGCCTCACAGAGCTTGGAAATGTTCCTCTGGTGGTTTCTGAGTTCTACAGCCTTTCCAATGCCATCAATAGCAGTGTCCTTGCCTTTAAAACCCAACCCAATATGAGCTGCACAGTACGCCTtctcagctctgagatcaatgTCCCAATGCTTGGTCAACTGGTCATTGAGGATCCTGAATCAGTGTCAGCATCTGAGACTGGACCGAGAAAAGGACGTCATACTGGAATCACGTGCCCAGGAAATAAAGCCTGTGACCACAACACAAGGGAAGTAGAGTTCTTGAAGACTGACTGTGCCGAGTTCCTCACATCACGTCTGAAGTACCAACATCTCAGTCCTCCATCACCTGAGATTGATTACATCCCAATCAGAGTGGAGTTCAGGGACCAGGCCTCCCGAGCAATGCTGGAGACTGAGAGTATCTGGATACCGGTACTGATCCAAGGGGCAATGCAGAACCAACCTCCCAATGCTGCCTTCATGTCCACGTTCATCTTGGAGGTAGATCAATTCATCCTCACCCCCATGACCACTGCTGCCCTGGATGCTAAAGATGATGAGACCCCTCAGGCCCAGCTCATCTTCAACGTGACCAAACCTCCAGAGGAGGGATATATTACTCATTTGGATGATCACACCAAAACTGCATTCTCCTTCTCATGGCAAGATCTGAATGAGATGAAAATTGCTTATCAGCCCCCAAACAGCAGTGACACAGCCAGGAGGAACTATGAGGTGGAGTTTCAGGCCATCGATGGCTCATTTGTGCCGAGTCCTCCGATCTTGATGCACATCTCTATCCGCACTGCAGAAACCAATGCTCCTCGAGTCTCATGGAATATGGGGCTGGATCTACTGGAAGGTCAATCCAGACCAATCACATGGGAGCACCTACAGGTTGTTGATAATGACAACATAAATGCTGTCACCCTGATAGCTATGGACGGCCCAATTAATGGACACTTAAGTGTTAGAGGTGGAAAAGGATTCATGTTTAAGGTCAAGGACCTCAGAGAGGGCGTTGTGGTCTATCATCACTCAGACAGCGACACCACCAAGGATCACATTGTTTTCCGAATCACAGATGGTCGCCACAGCATCAGACACAAATTTCCCATCTACGTTCTTCCCAAAGACGACACCCCTCCTTTTCTAATCAATAACGTGGCCTTTGAGATCCAAGAAGGTGGCATAGTTAGGGTCGAGGAGTACATGCtgatggcctcagacttggactCCAGCGATGACTATATTCAGTATCAGCTGATTACTTTTCCCAGAACGGGACAACTGGTTAAGAAGTCCTCTCCACATGAACCAGGTATTCCGGTGAAGAGCTTTCTGCAGAGGGACCTGTTTCAGGGCTTTATCTACTATAAGCATTCAGGCGAGGAAGTGTTTGAGGACTCTTTTGATTTCATCCTCTCAGATCTCCATCAGCCTCCGAATCTATCAGACAGACATACTGTGGTGATCCACGTGTTTCCAGTGAAGGACCAGCTGCCTGAGGAAGTTTCCGGAACGGTTCGCTCCATCACGGTTAAGGAAACTGAGGTTGTTTACATCACTCAGAACCATCTGCACTTCAGAGATACAGAGCATTTGGAGACGGACCTATTGTATGTGATCACTCATCCCTGCTTTAGCCCAAGAAACACCAGATTATCAGATGCAGGCAGGCTGTTTTATACCGACAGCACAAACTCCATGAAAAAAGATGCAATGGTTCCAGTGCTCAAATCCTTTACTCAGCATGCAGTGAATCACCACAAAGTAGCTTACATGCCTCCAATAGAAGATATCGGCCCTGAGCCTCTCTTTGTGCAGTTTGAGTTTTCTGTGAGCGACCAGCAGGGCGGCGCTCTCACAGGATTCACCTTCAACATCACAGTCACACCTGTTGACAACCAGGCCCCAGAAATGTTCACTAACTTGCTGAGGGTCGAGGAAGGTGGGGGCAGTTTCCTGATGGAGGAACACCTGCTGGTGCAGGATGTGGACAGCTCAGAAGATCAGCTCAGGATACACATGAAGACTCATCCCCAACATGGAAGACTGGAGCTGCAAGGCACTGCACTGCTAGAAGGAGATAGCTTCAGTTTGCAGGACCTCAAAGCATTGAGGGTCAGataCATTCATGATGACTCTGAGACCTTGAAGGATAGCATTGGTCTTACTATCACAGATGGAATCAATTCTGCACATGGAACGCTTTTAGTTCAGatcCTGCCTGTGAACGATGAACCCCCTCAGTTAGGCTCCGACTTGAGGGCTGAACTGTCCTGCAAAGAGGGGGGTCAGGTCCAGATTACGGTCGAGTACCTCTCTGCTACAGATGTTGACAGTGAAGACACTCAGCTAACGTACATGCTTGCCAGAACACCTGCACGTGGTGTGCTGCAGCGAAATGGGGTCACCGTGGACAAGTTCTCCCAGCTGGATGTGCTCAATGGGCTCATCTTCTACCTGCACACAGGTGGTGAGATTGGACCTGATCCTGTCTCGGACACTGTCACTCTCATTGTGTCAGATGGAGAGGCTGGAACAATAGATGGCTGCTGCCAGGAGGATGCACAACCCCCACCCGTTCCACTGCATGGCACGCTTCCGGTCTATGACCTCAACATCACTGTGATGCCTGTCAACAACCAGGTCCCAACCATAACACTGGGTACCATGTTTGTGGTAGATGAGGGTGCCATTGCATGTCTCTGTGGGGGGGTGTTGGAGGCAACCGATCCTGATAGTCATCCAGATCAGCTCATGTTTCATTTGGTGACCCCACCACAATATGGGTTCCTGGAGAACACCCTTCCATCCCCTGGCTTTGAGAAAAGCAATGCTGGACTCCGAGTGGtttctttCAGCCAGCTCCACCTCAGCTCAGGTTTCATCAACTATGTTCAGTCAGTGCACCAAGGTGTAGAGCCTACAGCAGACTTCTTTACCATCAGTGTTAGTGATGGGATTCAGAGATCAGCACCGAAGCCTTTCTACGTCATCATCAACCCTATAAATGACGAGATCCCATCACTGCTCCTTAGCAACTTTACAGTCATGGAGGGAGGGATGAAAGACCTCAGTCCTGATATTCTAAACGCAGTGGACGTTGATATTCCAGCAGATACTCTTACAATGACCATCCTGGTTCCCCCAGCCCATGGTACACTGGTCAATGGCATATATGGTCTTGAGATGAATCGCTACAAAAACCCTGAGATCCTACAACGAACCATCACAATCCAGTCTTTCACCTTACAGGAGCTACAACAAGGAATGAAGATCATGTATATGCACGACGACACAGAAACCCTCAAGGACGCTTTCACCATACAGTTGACAGATGGTGGGCACACAGTCCAGGGGACTGCGTGTGTCCGCATCATACCAGTCAATGATGAAAAGCCATGGCTACTAAAaaatgcaGGCATTGAGGTCGAGGCCCTGGGGAAGAGAGTCATCTCCAGTGTAGTGCTGGAGGCAGGGGATCGTGACACTACCAACGACCATCTTCTCTACATTCTCAATGCAGGTCCCAGATTTGGCCTCCTTCAGCTTAGGACAGAAGCTGGATGGATTGATCTGAGTCCAGGTCTGAATTTCACCCAAGAGGATGTGGAGATGAATCGCCTATGGTACAGTCACACTACAGTTAGCGGTTTAAAAGGCCATGACAGGTTTCACTTTGTTCTCAGTGACGGGGAAAAAACAACACCTCCACAGAGCTTCTTCATCTCTGTCCGCACTGTTCGAAAGGGTGACATTGCTCTAATCACTAAACCTGTGACCTTGATGGAGGGAGAGAAAGTCAGTCTGACCACTGACATTCTGATGGCCACAGACAGTGGAAGTGAACCAGAAGAGCTCATATACACTGTATCAGTCCCACCTGAACATGGTCACCTACACATGGTCCAAAGTCCAGGGGTTCCAGTGCTCTCCTTCTCCCAGATGGATGTGGCTGCCAACCGGGTATGCTACACTCATGACAACAGCCGTTTTGCTGACCGTGATTCTTTCAGCTTTGCTGTTACCAATGGTGTGACATCCAGAAGCGGTACAATTTATTTCAGTGTGGAACACAGTGACCGTATCCCACCAACCCTGACTATCAACAAAGGCCTTGAGCTCACAGAGGGCTCTGTGAAGACCATTTCCACTGGTGAGCTGAAACTGACCGACCCAGACACAGCTCTGGAGAATCTCACCTATGTGGTTATCCAAAGCCCACAATATGGAAAGTTGCTTTTGAAAGGATTGCCCCTCTCTAAGCCTCGTTTCACGCAGCTGGACATTAACAATATGGATCTAGCTTACCATCATCTGAACGGACGGGCCAAGATCGACAGGTTCACCTTTCAGCCTACTGATGGAACTAATACAGGTTATTTGGAGTACGGACAGCTGAAGGGAGAACCTGCGGTTTTTACTATACAGATCGAGGTATTGGACAAGACCCCACCCAGTATCATAAACAAAGGGATTGCAAGCACTCTGGAGAATCTTGCAGACGGGAAACAGGGCATCTACATCACCTCCAAAGAGCTGCGTGCCTCCGATCCAGATAGTCCTGGCGACACACTGGAGTTCAGCGTCACAAGGCCTCCACACTTCGGTTACCTTGAAAATGTCCTCACAGGTGCCTATATCAAGGGACGCTTTACCCAGAAGGATCTGGAGCAGAAAGCAGTGCTCTTCGTCGTTCCTGCAGATATGGAAGTGACAGCAGACAGCTTTGAGTTCCAAGTCACAGATCCTGCAGGAAACACCATGCTTCCTGAAGTGATGGAGTTCAGGTGGTCTCGTGTGGAGCTGTCAGCTTCCTGTTACCGTGTTTGTGAGACTGCAGGAACTCTAGCAGTGCAGGTGGTGCGCCGCGGGAACAGCAAAGATCCGGCGTACATCGCCATACAGGTGGAAGAAGGAACGGCCAAAGAGGGGAAAGACTTCACTCACAGCTCTGCCAACCTTATACAGTTCGATCCAGgTGTAAATGTCAAAACGTGGAACATCTACCTCAAAAATGACGGACTAGAAGAGAACCATGAGAAGTTTGATGTCGTTTTGAAGACCCCCAAAAATGCTGTTCTGGGACAGAGGAGCAAGGCCACCGTTGAGATTGTGGATCCTAGAAATGGCGGGTGTCATCCAGACGAGCTTATCGTCGAGGAAGATGAGATGCAGCATCCTGTCCAAAGCCTCCCCCGCGTCCCGGAGCCTGAACCGCCCTCGCTCGACGAATACACTCCAGACCCAAGAACAGGGATTCTTTGGGAGAACTATCCACCGAGAGGGGACGTCCCGTACCGCACACACTTCAGCCATTACAGCGAGGGAGAACATCAGGACCGGGGGAACTCGCACAGTCTGGGTCAAAGACGGCTGAGGATTCTGGGTAGAAACAGGCACGGGGCACATCTGTCAGAGGTGGACGACAGAAATCAGGAAAGGGTCTGGAGATTTCACGGCCTGATTCCAGTGAGAGTGGAGGAGAAGGCCCCAGCACCGGCACCTCGTGTCCACTCTGAGCTGGAGATCACGCCCATCTGGAGCTGGCCGGGATACTCTGCTGATGCCGAATCGCTAGAGACTCCCCAGCGCGACTCGGCCTCCTTTCTAACCGATTCAGCCGCACAACAACACAAGtctcagAAGTCTGTTAGTATTGGCTGTCCTGACGGCTGGACTCACTACCGGAGGGGCTGCTATATTTTGGGGCCTGGTATTGCTAGCTGGAGCAGCGCACAACACGCTTGCACGCTGCTTGAAAGTGAATTGATCAGCATCCACTCCAAGACCGACATGAGGTGGACGTGGAAGTTTGCAGGACGGCAACCGTTCTGGATTGGGCTCTCTGGCGGTCCAGACCAGCGGTCGTGGACGGACGGGAAACCGCTGACGTTCTCTAGACTCAGGAAGGATGTCGAGGAACATGCCAGATCTGCTGCCGGCTGTGTTTTAGCTCAGAGCCAGAAGATATGGATTCCCAGAAGTTGCGTCGATGGATCCGAACACAGATACATTTGTTCAGCTCCTGCGCAAATCGGCTAAAACggatatttaatttataatgctCTTGTTTcttaatggtttaaaatgcattgtagcCACTGAAGTGctgaatgaatataatacagCTCACGATGATATGATTTCTTgggttattaaaataaatacaattcataAGTGTCAAATAAAAGTGATGATAAGAAG

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223441 lncRNA upstream 50636 9145211 ~ 9147388 (+) True G150983
XR_006247700.1 lncRNA upstream 126852 9068732 ~ 9071172 (+) True LOC122327612
TU223424 lncRNA upstream 168114 9025901 ~ 9029910 (+) True G150970
TU223423 lncRNA upstream 184172 9013534 ~ 9013852 (+) True G150969
TU223420 lncRNA upstream 202541 8995206 ~ 8995483 (+) True G150967
TU223722 lncRNA downstream 54154 9277690 ~ 9283004 (+) True G151163
TU223740 lncRNA downstream 136892 9360428 ~ 9365322 (+) True G151178
TU223767 lncRNA downstream 231765 9455301 ~ 9464513 (+) False march2
TU223772 lncRNA downstream 249450 9472986 ~ 9475031 (+) True G151194
TU223789 lncRNA downstream 291204 9514740 ~ 9515568 (+) True G151210
XM_043223444.1 mRNA upstream 193119 8995971 ~ 9004905 (+) True tm2d1
XM_043222327.1 mRNA upstream 305825 8890622 ~ 8892199 (+) True pdzk1ip1
XM_043223371.1 mRNA upstream 311596 8880269 ~ 8886428 (+) False tal1
XM_043222443.1 mRNA downstream 274 9223810 ~ 9227301 (+) True atpaf1
XM_043222442.1 mRNA downstream 4872 9228408 ~ 9235230 (+) True rab3b
XM_043222441.1 mRNA downstream 12563 9236099 ~ 9248034 (+) True nrd1b
XM_043222292.1 mRNA downstream 25151 9248687 ~ 9257262 (+) True axdnd1
XM_043222312.1 mRNA downstream 37226 9260762 ~ 9270135 (+) True tdrd5
TU223418 other upstream 209333 8988186 ~ 8988691 (+) True G150965
TU223398 other upstream 276057 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 278244 8919279 ~ 8919780 (+) True G150945
TU223385 other upstream 295713 8901143 ~ 8902311 (+) True G150940
TU223378 other upstream 305943 8890643 ~ 8892081 (+) False pdzk1ip1
TU223769 other downstream 231765 9455301 ~ 9530165 (+) False march2
TU223817 other downstream 354143 9577679 ~ 9580151 (+) True G151232
TU223952 other downstream 664664 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 700011 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other downstream 705143 9928679 ~ 9963634 (+) True LOC122328159

Expression Profile