RNA id: XM_043222464.1


Basic Information

Item Value
RNA id XM_043222464.1
length 10352
RNA type mRNA
GC content 0.48
exon number 54
gene id dock3
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16600630 ~ 16749928 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttaaactgacgTATTCTGCCGCCGCGTGAGTCATCAACGTCCTTTTAAAGAGACTTTCATAAACactgaagaacaaacaaacaaacaaacaaacaaacggcCGACGGAAGGATCGCTGTCGTGAAACAGCGCGTTTTCTCATGACTCCCCGGACTGTCTGAAGAAGGtttttctgtagtttttttttgtcgtgTCGCCGTGCGTTCACGCCGCAGAGAAGAGAAGCGTCCGTCCCGAGAGCTCGCGCGTTTACCGCCACGGCGAGGCGCGTGTCCCGTTAGAGAGCGACACTCTGCGTCATGTGACGGCggcggacggacggacggagaGATGAAGATGGCGCAGCGCCGGCGCTGAAGAGTCTCCGCCGTTCACCAGCGCCGAGTCACGGGAGATCGCCCCGATCACGCGCGCGCGCGAGCGACTCCGGAGCCACGCTCAAGGTTAGCTCGCCCTCGCGCCGTTTCGTCGGAATCCAGCGGTAAATCACGACTCGACGAGATAAATAAATGATCGGCTCTCCGTCCTCAGATGCTGCCGCCGCCGCATCCATAACGGGAGACCCAGACGAGCGGATGGGAGACCGGAGCTGACGCGCGCGACGGCTCGACGCTTTCACCGCGCGCACGGCTGTGACAGAAACGTCTGCTTCAACTTTGCATGCCATTTAACCGAAACTCTTCTAATATCTTGGGTGTTTTACCGGGATCATGTGGACGCCGACCGAGGACGAGAAGATCGGAGTGGTGGTCTGTAGTTTCCGTGGATCAGTGTCACACGGTCTGACTCTAGAGCTTGGAGAAACAGTTCAGATCCTGGAGAAATGTGAAGGATGGTATCGAGGATTTTCCACCAAGAAACCCACAATCAAGGGGATCTTCCCGGCCGGCTACGTCCACTTGAAGAAGGCTGTGGTCACGAACAGAGGGCAATACGAGACGGTGGTCCCGCTGGAGGACCCCATCATCACAGAGGTCACCTCTACTCTTCAGGAGTGGTCAGTCCTGTGGAAGCAGCTGTATGTGAAGCATAAAGTCGACCTCTTTTACAAGCTCCGCCACGTGATGAACGAGTTGATTGATCTGAGGAGACAACTGCTTTCAGGCCACCTGACCCAGGATCAAGTCCGTGAAGTCAAACGCCACATCACTGTACGACTGGATTGGGGCAATGAACACTTAGGCTTAGATCTGGTGCCCAGGAAGGAGTTTGAAATGGTTGATGCCGACCAGATCAGCGTTTCTGATCTCTACAAAATGCACCTGTCCAGCAGACACAGCGTCCAGCAAAGCACGTCCCAGGATGGTGGAAGACAAAGACACGGGGACACGTGTCGGATGCCTGTGCCGCACCATCTCTTCGTCAACCTGAAGAGTTTCACATACAACACCATCGGAGAGGACACAGacatctttttctctttgtatgACCTGAGAGAGGGCAAGCAAATCAGCGAGAAGTTTATGGTGAGACTCAACAAAAACGGTGGGCCAAAAAACCCGGAGAAAGTGGACCGTCTCTGCGCCCTCTTCACGGACTTGAGCAACAAGGACATGAAGAGAGACCTGTACATCGTGTCCCAGGTCATCAGGACGGGGAGGATGCTGTTAAACGACTCGAAGAAAGGCCCCCCTCACGTCCAGTACCGGAGACCGTACGGATGCGCGGTGCTGGCCATGAGCGACGTCCTTCAGACCATCTCTGAACTCAAAGAGGAGAAAGACTTCGTGCTCAAAGTTTACACGTGTAATAATGAAAACGAGTGGTACCAGATTCACGAGAACATTATCCGCAAGTCCAGCACCAAATACACCGCCCCCAGCACTAACTACGGTCTAATCATCTCCCTGCAGCTGTTGAGGGGCGACATGGAGCAGGTGCGCAGGGAAAACCCCATGATATTCAACCGCGGCGTGGCCATCACGCGCAAACTGGGCTTCCCTGATGTGATCATGCCAGGTGACATACGCAATGACCTCTACCTCACGCTGGAGAGAGGAGACTTTGAGAGAGGAGGCAAGAGCGTTCAGAAGAACATCGAGGTCACCATGTATGTGCTCTACGCTGACGGCGAGATCCTCAAAGAGTGCATTAGTCTGGGCTCAGGAGAGCACAACATCAGCGAGTACCGCTCTTTCGTCCTCTACCACAACAACAGTCCTCGCTGGAGTGAGGTCGTCAAACTGCCCATCCCCATAGACCGCTTCCGCGGGTCCCATCTGCGCTTCGAGTTCAGACACTGCTCAAcaaaagaCAAAGGAGAAAAGAAGCTTTTTGGCTTTGCCTTCACTCCTCTTATGAGGGAAGATGGCACCACGCTGTCTGACGAGAGCCATGAGCTTTACGTCTATAAGTGTGATGAAAACACCACCTTCAGTAACCACGCGCTGTACCTGGGTCTGCCTTGCTGTAAAGATGACTTCAACGGCTGCCCGAACATCCCGTCCAGCCTCATATTCCAGCGCAGCACTAAAGAAACCCTCTGGATATCCACTCAGCTCTCCTCCACCAAACTAACACAGAATGTCGATTTACTAGCCTTGTTGAAGTGGAAAGCCCATCCAGACCGTGTAATGGATATTTTGGGCCGATTGCGGCACGTCTGTGGGGAAGAAATAGTCAAATTTCTTCAAGACATCCTCGACACGCTGTTCTCCATTCTGGATGACAACACAGACAAATACGGACCCCTGGTGTTTCAGTCACTGGTGTTCATCATCAATCTGCTCCGGGACAGTAAGTTTTATCACTTCAGGCCTGTGATGGACACATACATCCAGAAGCATTTTGCTGGAGCACTGGCTTATAAaGAGTTGATTCGCTGTCTGAAGTGGTATATGGACCGATCAGCAGAAGTTGTTCGGCAGGATCACATTCAGGAAGCCATGAGGGCTCTAGAGTACCTGTTTAAATTCATCGTCCAGTCACGGATCCTGTATTCCCGGGCCACCTGTGGGATGGAGGAGGACCAGTTTCGGGCTAGCATCCAGGAGCTTTTCCAGTCCATTCGTTTTGTGCTCAGTCTGGACAGCCGTAGCTCTGAGACACTCATTTTCACACAGgctgcCCTACTCAACTCGTTCCCAGCTATTTTTGACGAGCTCCTCCAGATGTTCACGGTACAGGAAGTGGCAGAGTTTGTGAGGGGAACTCTAGGTAGCATGCCTAGTACGGTCCACATCGGGCAGTCCATGGATGTGGTCAAGCTGCAGTCCATCGCTCGGACAGTGGATAGCAGGCTTTTCTCCTTCCCTGAATCAAGGAGAATTCTCCTTCCTGTTGTTCTCCATCACATTCATCTGCATCTGCGCCAACAGAAGGAGCTTCTGATCTGCTCGGGAATCCTGAGCAGCATTTTCTCCATCATTAAGAGCAGCTCATTGGAGAGCTCTGTGCAGGAGGAGGTAGAGATGATGGTGGAGAGTTTGTTGGATGTGTTGTTGCAGACGCTGTTGGCCATCATGAGTAAATCTCAGTCTCAGGAGGCGGTAAGAGGGCAGCGCTGTCCACAGTGCACGGCTGAGATCACTGGGGAGTATGTGTCCTGCTTGCTGTCCCTCCTGCGTCAAATGTCGGACATTCATTTTCAACACCTGATGGACAACTTCCAAAGCAAAGAGGAGCTCAAGGAGTTCTTGCTGAAGATTTTCTGCGTGTTCAGAAACCTGATGAAGCTCAGTATATTTCCACGTGACTGGAACGTCATGCGACTGCTGACCAGCAACATCATTGTGAGCACGACTCAGTATCTGTCGCCTGCTCTCCATAAAAGCTTCACGGATGCTGACTTTGATTTTAAGGTGTGGAACTCGTACTTCAGTCTGGCCGTGTTGTTTATCAACCAGCCCAGTCTACAGCTGGAGACTCTGACCCCGGCCAAGCGGAAGAAGGTGTTTGACAAGTATGGTGACATGAGGGTCATGATGGCTTATGAGCTGTTCAGCATGTGGCAGAATTTGGGTGAGAATAAGATCCACTTCATACCAGGAATGATTGGCCCATTTTTGGGTGTGACGCTCGTACCGCAAAATGAAGTCCGAAATATAATGATCCCCATCTTCCACGATATGATGGACTGGGAACAGAGAAAGAACGGCAACTTCAAACAGGTGGAGGCAGAACTGATAGACAAACTGGACAGTCTGGTGTCTGAAGGCAAAGGAGATGAGAATTACAGAGAACTCTTCAGTTTGCTAACTCAACTGTTTGGGCCGTACCCCAGTCTGCTGGAGAAGATCGAGCAGGAGACCTGGAGGGAGACGGGCGTCTCTTTCATCACGTCTGTCACGCGCCTCATGGAACGACTGCTGGACTACagAGATTGCATGAAAGGCGATGAGACAGAAAACAAGAAGATCGGCTGCACTGTTAACCTGCTGAATTTCTACAAGTCAGAGATTAACAAAGAGGAGATGTACATCCGATACATTCACAAGCTGTGCGACATGCACCTTCAGGCCGAAAACTACACAGAGGCGGCGTTCACGCTCCTGCTGTACTGGGAGCTGCTCCACTGGGAAGAGAGACCCCTCCGAGAGTTCCTGCACTATCCTGCTCAAAGCGAGTGGCATCGCAAGGAGGGCCTCTGTCGCAAGGTCATCCACTACTTCAACAAGGGAAAGTGTTGGGAGTACGGCATCCCGCTGTGTCGCGAGCTAGCCTTCCAGTACGAGTCCTTGTACGATTATCAGAGCCTCAGCTGGATACGGaaaatggaGGCGGCGTATTACGACAACATCATGGAGCAGCAGCGACTCGAGCCGGAGTTCTTCAGGGTGGGGTTTTATGGCCGGAAGTTTCCCTTCTTCCTCAGGAACAAGGAGTTTGTTTGCCGAGGGCACGACTACGAGAGACTGGAGGCCTTTCAGCAAAGGATGCTGGGAGAATTTCCGCAAGCTATCGCCATGCAGCACCCGAATCAACCCGATGAGGGGATTTTACAGGGAGACGCCCAGTACCTCCAGATCTACGCCGTGACTCCAGTTCCAGAAAACATCGATGTGCTGCAGATGGACCGCGTGCCGGACCGCATCAAGAGCTTCTACAGAGTCAATAACGTCCGGCGCTTCCGCTACGACCGGCCCTTCCACAAGGTGCCCAAAGACAAGGACAACGAGTTTAAGAGTCTCTGGATCGAGCGGACCACACTCATCCTCACCCATCCTCTGCCCGGGATCTCCCGCTGGTTCGAGGTGGACAAGCGTGAGCTGATCGAGGTTAGTCCGCTGGAGAACGCCATATACGTGGTGGAGAACAAGAACCAGGAGCTGCGCACCCTGATCAGTCAGTACCAGCACAAGCAGCTTCACGGAAACATCAACCTGCTCAGCATGTGCCTCAACGGGGTGATCGACGCCGCCGTCAACGGAGGGATCGCCAGATACCAGGAAGCGTTCTTCGATAAAGAGTACATCAGCAGTCACCCAGAAGACACGGAGAAGATCACCCAGCTCAAAGACCTGATGCAGGAACAGGTCCACATCCTCGGCATGGGCCTGGCCGTCCACGAGAAGCTGGTGCATCCAGAAATGCGTCCCCTGCACAAGAAGCTGATCGATCAGTTCCAGATGATGAGGAGCAGCCTCTGTCATTGTTTCTATGTGGCCCTGCAGGGCCTGCCCGGTCTGGATAAGCTGAGTCCGGCCTGCTCAGGGTCCAGCACCCCACGCGGCATCCTCGCCACACACAGCCCCATGAGTCCCGAAAGCATCAAGCTCATGCACCGGCACAGcCCTCTGAATGTGTTGGGCTCTGTCCGCCATTCgtcctcttctctctcctctcacacTTCCAGTGAGACAGGGAACCTGCTCATCCTGACGGACAGTATGATGGAGCACCCGGAGGACCTCTACCGCATGCAGCCCAGTCCGTCATCGTCCAGCTTGAGCTCCACGCATTCAGCTCCCTCTCAGATGATCAACTCAGGGCACGGCAGCATCAGAGTTGGGTCCCCATCACTACCTGACAGATACAGACACAACAGAGAGATGTTAATGCTCCTACCACCACACAGGGACCGTCCCAGCAGTGCCATGTACCCCAACATGACCGAGAATGGACAACCTACTAACCATCAGAGGGCTCTTTACCATCAGGTCATTGGTCCCTGCAAACCCTGCAGTGACCCCAATCTCTCTGTGGCTGATAAAGTGTTGACGGCTCCCAGCAGCTGGAGTTTGGACAGTGGCACCAGGGACACGCTGCCGTTCCTCTCTGCTCATGTCGGGAGTGTGATGGCCCCACCCGTTCCCCCCCGCACCCTTCCTCCCGGACACTTCTCGATGCACTTTGATGCTTTCCACCACCAGATCAACGAACTCCCTCCAGCTCTCCCCGCGCGCTCTTTAAGAAAGTCACCCCTTCACCCTATACCTGCCTCACCCACCAGTCCACAATCGGGCCTGGATGGCAGTAACTCCACCTTGTCAGGCAGCGCCAGCAGTGGCGTCTCCTCCTTGAGCGAGAGCAATTTCGCCCAGTCCTCCTCCGAGCCTCCGGCTCGAGCCGACACCTTGGACTCGATGCCGAGCAGCCAGGCCTGGACCACGGACACGGAGGAAGCCGAGAGTCCCTACCTCCCCGTACGCTACAGCGTCTCCGAGCCTGAAGTTCTGGACCCTCTCAAGCCCGCTCCTTGCCGTAGTCATTCAGCCCCTTTGGGCGTAACCCCAGGGATGCCCACCGATGGGCACCACCATCATCACCTACATCTCCACCATCACCACCCACATGCAATACACATCACCCACCCGCACTACCACCACCACGAGCCTGCACCTGCTCTGCCTCCCAAACCTTACTTGAGGGAAGGGTGTATCCCCGAAGAGGATCTGAGGCCGGTTCCAAGGCCAATGCCCCGCAAGATCTCCCAGCCTCTGCTCACTAACAAGGAGGAGCAGGCCAAGGTGGCCTGGGAACATGGCATTAGTGAAGAATAGATGAAGAGCGAGGTTAAGCTCGATCCGGTTGGCTTTAGTGTGATAGGTGGTTGGGTTTTGGGAATGTCCCAAGAACTGACTGGGTTTGAACCTCTACTCCACTTCCCATGTATCCAGTGTAGGTCTTTGAAACCTTTTAAGAAGTGCTTGACATGTTTCTGAGCTTCTACATGCTAGTGAGACATTTTGTTGTGTGCTTAGTGGTTGTTGATTGGGAGTTGCCCAGGAACCTTGAGTTCAACCTGTTTGTAGAGCCCAAGCTACTTCCCCTCATTAGTATCAGTATATTGATTGGATAATACAGATATGGTCCCGAAAGGTCTTTCAGATCAAACAGGAAGCACAAAATCACATTCAGGTGGTTTTCAGGTCTAACCAGATCTAAGCGTTTCGTGTCCTAAGAGAGAGATACACCTCTTGTCAAGGTCTACAACTTGTTAACACTTCATCATCATCGCAATAGTTTTGATTGATTGACGTAATACACCTTTTGAAGAAAAAGCATCGATAAACCTTACCAATAGGCGTTGTTCAGTTCTGGTTAGGTTGCACTTTAGCACTCAACCTcgtctattttttattttaaagaataatttagAAAGTGGTCAAAAGTGGATTAAATAGTGGCTAAATTTGGAATTAAGTTCACTTTCATCTCGGTAGCCCTCACGAGGATGAATTTCAGATCCTCAAAGATTATCTCCATTGACTAAACGTTCTCATTCCCTCTGACAGGATACTTCCCAATCCAATGCAAAAGCCTCAGACGTGGTTTTTATTAACACAGCGGTTGATATAGCATGCTAACACTTCATTACCGAGCTAAAAACACTTAACAGAACGTCTGCTACCTCCTGCACGGTTGCGGGAAGCTTCTCCTCAGAGAGAATCTGCACTGATGTGACAGTAAGAGGCTTTTACAATCTCGGTAAAGCCTCATTACACCCACAATATTGTCGTGCTGCGAAAGCAAATCAGCCACTCTCAACGCTACTACCCCGTTACGCTAATAACGCAACAGCCAAAGCGCTGTTAAATCAAAGCCATTTCACAGATGTCTCCTCACGGTAAAGCGGCTTTCGGTCTCAGTAGGTTCCTTTGGGAATTGATTTCCGTTCCTCTGAGTTGACAGTTTTCATAAAGAAGTATATTTTTAGATAGAGCTGTTATACAATTCCAAGactttaatataattgtatagtattaaaaaaaatacaaaaagagagGTAGAATAAATACAGCTTAGATTATATCATATACTATATTGCTATGAAAGATTATATCACACATTTCTAAAGATGGAAACCAGGCAAGATTCACGGGTGTGTTTTATGTTGTGAGTTGAGTGACTTCGAGAAGTCTTTTAGCTGCCGATAGACGCAAATTCGGTACCTGATGTTCTTTGCGTATTAACTTCTGACGACTTGAACgtatgtgttatttaaaaagctaatttttatGTACAATGTGCATGTTCTCTTCAACGGTGGTGATAATATTACGCTACATCACTTGAAGGGAGGGTCTGGTAGAGGTATTGCTTGTACTGTATATCTACGCATCCTCATCCGCAACACCATTAACTAGCATTTCATGTGAAACTGTTAATTATATCTGCTTCGAGCAAAACACTGCATATTGAGTCTGAAATAAACTGAAGTGGCAGGAAAAAACGTAAATCTGCTGTCCCATTTTAATTTCGCTTTTCAAAACGAAGCAAGGACATGCATTCAAGAAAGCGACGAATGATAAaagctatattattattattatttattatgatgtggtttaatttggttttataTCACTTAAgtgcaaaaatatgttaagaGTTTTGAAAggaactttttatttattataagtcCTGGTGTACAAACACAAAAGCATATACCGTACTTAGGGCTGCTGGTTATATGAAACACGGATATTTGAAGGCGTTTATGATATGAAGACTGCACTGTTTATGGCAGTTTGTAAACGCAAGTTATCTTAATGGCCGATATGACTGATAGTTCTTGACTAAAGGCCTTTTTATGATAGAGGACCTTCTTTAGATGTGGGAGTCTCTGACTGATTGCATTACTAATATTCCCATCTGTTCTCCATTCTGTCTCTTCATTTGTATGCACTTCCTCCTGAAGTAAAACTGGTGATGGTATGCATTTGTAaatttattactattgttttttgtttaattatagaCATATAATGATGAAGTAAGAGCGTTATGTCTccaaagacacacacagaaatggtTTGACCGACGAGTTATTTGCGATTACCTTAACATCTTGAggttaataaatcattttatacacattaaatattgaatgaTCAGGGAAGGAACTGGAATCTATGCAAAGATCGAGTGTTATAAGAGAGAGTGTATCTGTGACGGCCCTTTCTGTGAATATTAGCACtgataaactaaaaaaagcattaatatttatCGTTTTGAGCATTTCTTATGGCTTTCTAGacatttttgcatgtaaatacagACTGACGGATACTGTGTGTCTTGTATTCATTCACCGTTATGATTTTGCTTGCATattcaagcaaaaaaataaatttaaaacgtATTATTATCACAAGGTTACTCATTTGGCACAAACAaacgtatataaaaaaaaaacaaaaaaaaaacgagtgtatatattttacatgtttgatATCTCCGTTGAGGCAAACAGACAGAGTTTCAGATTGAgggtgacattttattttttacatgacGAGGTTGCCCTGATAAGCATCTATAATTTAATACCTTCTGAGATAAGTGTTTTGCTTAACAAAAATTGGGTTTATTTTCCTGTATTTGCTGAAAGGATTGATTGCCATTTATTGGAAATAACTAAGAGGATGGTGAGCAAAGGGGAAAAAcatcttcttttttctttttagtctCTGTACATACGAGTAAAGACGGATACTAAACGCTCTGGTCTGCATTACAGCTCGTACCACACCATGTTTGGCTTTATTTCGTGTATATAATCCTTCAAAAGCTTTGTATTTATATGGTCAAGAGGGACAAATCATGTATAGACTGAGATTAATTGTCTGCCTTGTACTTTCtgatgtaaatgtgtttttaaaactaaactgcgaacgtgaaaaaaaaaaagaaaaaaaaaactttcaatgGCCTAATCACTAcagttattttgtgtattttgcattGAAATCTGAAGAGCGTTTTGTTTTACCATGCAGAACTACGACAACCTTTGTACAAGTATTCTCaaagtattttttctgtatatattgTGCTAGCATGAATACATGTGGTGTGGATTTTagatgtaaatacacacatttttttcctactCACTTAACCGCTGTGACGTGTAATTCATTAATATTGCCTAATATTAAAGATAATGTTTTATCGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227279 lncRNA upstream 34019 16566052 ~ 16566670 (+) True G153504
TU227275 lncRNA upstream 44079 16554933 ~ 16556610 (+) True G153501
TU227276 lncRNA upstream 44079 16554933 ~ 16556610 (+) False G153501
XR_006247770.1 lncRNA upstream 55339 16535019 ~ 16545350 (+) False LOC122328065
TU227368 lncRNA downstream 7867 16757795 ~ 16758127 (+) True G153568
TU227369 lncRNA downstream 9217 16759145 ~ 16759580 (+) True G153569
TU227383 lncRNA downstream 55254 16805182 ~ 16805608 (+) True G153583
TU227415 lncRNA downstream 322586 17072514 ~ 17072936 (+) True G153610
TU227465 lncRNA downstream 669796 17419724 ~ 17419944 (+) True G153645
XM_043222445.1 mRNA upstream 123078 16382185 ~ 16477611 (+) False grip2b
XM_043222444.1 mRNA upstream 123078 16382186 ~ 16477611 (+) True grip2b
XM_043223195.1 mRNA upstream 263571 16329725 ~ 16337118 (+) True sec13
XM_043222222.1 mRNA upstream 281311 16317387 ~ 16319378 (+) True rpl32
XM_043223757.1 mRNA upstream 356147 16241163 ~ 16244542 (+) False LOC122328055
XM_043223198.1 mRNA downstream 785 16750713 ~ 16752754 (+) True manf
XM_043223197.1 mRNA downstream 2975 16752903 ~ 16756930 (+) True rbm15b
XM_043222369.1 mRNA downstream 290734 17040662 ~ 17069967 (+) True dag1
XM_043222370.1 mRNA downstream 290734 17040662 ~ 17069967 (+) False dag1
XM_043223130.1 mRNA downstream 603889 17353817 ~ 17369897 (+) False srfa
TU227194 other upstream 101276 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 214513 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 450845 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 453552 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2570 other upstream 454937 16145680 ~ 16145752 (+) True trnaa-agc_26
TU227461 other downstream 665525 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1176423 17926351 ~ 17927244 (+) True G153741