RNA id: XM_043222476.1


Basic Information

Item Value
RNA id XM_043222476.1
length 4656
RNA type mRNA
GC content 0.46
exon number 12
gene id ccdc50a
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12056820 ~ 12077871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacggagctCAGTTTTTCCTTCgcagtttgtgtgtatgtgtgtgtgcgcgcgagcTCGCAATATTCATCTGCCGAGGGTACAGAGGGAGGGACGGACAGAAACCTCGGCTGGCGACAGAAACCAATCAGAGCGACACATTAGCGAAGACATCGATCGGGATTTATTTATCTGACGGAAACCGCCATCCGTCTGTCAAACAATAACCTTCAGAAACCCCAGAGAAACATTACGCGCCCGCGACGACATGGCTGATTTTAGTATTGATCAGAACAACCTGCCTGGCGTAAAAGAGGtCTGCCGGGACTTCGCCGTGTTAGAAGACCACTGTCTGGCCCACAACCTTCAGGAACAGGAAATCGAGAGCCACCTGGCCTCCAACGTCCACAAGAGCCGCCTGGTGCAGCAGGACCTGCAGGTGGCCAAACGTCTGCAGGAGGAAGAGGACAAGCGGGCCAAAGCCGAGAGCCAGAGACAGCACCGCCACCTGGAACGCATCGACAATGAAATGGCTCAGGAGATTCAAGAACAACTGGTCTGGCAGGCTGAACAGCAGCGGCAGCAGGAGGAGAAAGACGAGGCCATCGCCCGGAAGCTGCAGGAGCGAGAGATGAAAGAGGAGAGGAAACGGCAGAAGCAGATGGAAGGAAACCCAGAGGAGTACTACGAAGAGAAAGCCTCCCGATTTCCACCGGACCGGCGAGAGCCAAAACCCCGTTCCGCTTCTCCAGGTTACAGAAAAGAGAAGAATCACGACTATGATCGGATTCTTTCCCCGTACAACTCTCCTGAACCCGACAGAAAAAGATATCCCAATAGCCGTAGCCGATATCCGGAATGTGAGCCCGTTGAGTTCAGCCGATCTAGGAATCCGGAGAGTCCGAGCAAGTACTGCTCACCTGAGCGACGaatcaaagaaagaaacaaacctCTCGATCTCGATCACACTGAACCACGTAGAAAAAAGAAGCAAGATCAATGGGACGACCCGGAGCTAGTGGTCCGCCGGAAAGAGAGGCCTCAGAGGGATTACTCTGCCGGGCAGGACAAGGAGAGGATCAGGGATCGAGAACGAGAATGGGATGGACGGAGAGCCAAGGAAAGGTCGAGAGATCGCAACCGGACAAGAAGCCAAGATCGATTGTTTAGCGGCATTGACAGAGGCAGGGACGTGGACCGGGAGATGGACCAAAATGGCTACGGACATGGTAGCAGAGAGAGGCAAAGAGAACGAGGTAGAGATGGGAACAGAAGGAGGCACAGAAGCAGGGAGCGTGACCTGGACGATTACGGTCTCGTCCCGACTAGAGGAAGCTCTGAAGTAAGCCTGGAGTGGGAGGATCACAAGAACAGGCCGAGACTCCCGTCAGGTCCTAATGAGGTGTTTGAGGAGCCCGTCCCCAGAGGTCCCTCAAACGAGGGCCGGTCCCCTGGTCATTCTCCCAGAGAGAGAGGTCGGAAGCCGCGAGGAGAATATGGCATGAAGGAAGCAACACACGGACTGGCCCAGTTAGACCTACAAGACCAGGAGCTCATAGACTTAGAGGTGGCCCGCAAGCTACAGGATGAAGAAATCAAGgCGAGTCAGTTCGACAGACGAGCCGCTCAGGTCGCACAAGACGAGGAAATGGCACGACGGCTAATGGAGGAAGAAAAAAGGGAGTATAAGAGGTCGAAAGATAAGGACAAACAAGTAATGGAGAGACGACGGCCTGAGGTGGAGTATAAGCCAGTGCAAGAAGAAGTGGTACGACCACGAACGAGAGAAGAGCCGCCGCGCATCAGAGAGGACGAGTACCAGAGAGCGCGCAACCACAAACCCGCCAGGCCGCCTCCTCCTACACAGCACTACGAGAACATAAACCCGAGCTACGCCTATGCGGACCCCTACTCCCCTCGTCCTCCATCAAGACCAGAGGCGGCGTACAAAGGTGCCTACTACAGACAGTGACCACAAGCCTCCACTGCTGTCCAATCATGAGTCCGTTCGGCCCTTTATTTTGCGAATCAGTAAAGGATGAAATGATTCATAAATACTTTGAGGCTTTCTGCAGAAGCTactgacactttattttattctttcccTATCGGGCTCATCTCTTCGGATGAGCCGACGTCGTCTCTTCGTGTCGTGAAAGAGTCTTTTACCCTGGAGCTACGGACTACTGGGTGACGGGGACCGTTCCTGTTTGCTTCTCATGTTCTCGTCTTATCGTGGATGACCGGACAGGAAGGGATCTACTGCACAGCTCTCTCGAATATCCCTTTTCTTTCGGCGTCTGTAACAAAGCTTCGTCTCGATTCCATGTTGAGTTCAGGATTTACGGCGGTTTTCCACTTTTCCGTGCGTTTTTATTTAACGGAAAACGTGCTTGGATTTCTATAAAGCGCACTTTTGtgctatatatttattgattttattttgagaggatgtattttattttgaatcgcTGATTGTTTTTACCCTCCCCCCCCCTGAAGATCTGAAGAGACTGTTAGCATAAACCAGGAGCGATCCGATTTCTGGAGATGCAAAATTTCACATATCTCAACGACTTAAGAAGCGGGTTTCGAGGTGAGGTTGTCGGCGCTTCTTCATTTTGCCTTCATATCATTCACGAGAGACTCTTTACCGGCATTGCGGGCTCGTGTACAGCTAGGGTTCGAGACGCTCAGCCTTCGGGTGTCTTTGTATCTGCGACATTTCCCCCTTCCCCCGCAGTGTCGGTAGCGATTCCCTCATCTTCGTCGTAGGTGCTTCAGGACCTACTGATATGCTCCAGTGTTCAAGTGCATGCTGGCTGAATGTGAACTTTATGGGGTCCATATGAATCTTGTCCAAAAAGTGGCCACAAACGCATCtttttcgtttatttttatatatttttacgtttttatttataattcagtACAAATCCAAAATACTAGTTTTAAAGCATGTAGTAGCATTGCTGTTGGCACAGATGTAAACGGTTTTCTCGCTTGCTGCATCATATGCAATCCATGCTAGTATATCAGTGTTCGGATTTGCCGTGCTTTGCATTCGGTGGCGAACTTACTTTAAGCAGGGACATAAAAACCGACCAGCAAACGGATCAAGGCAGCAAACAAGTGACTATAGCGTTCATCTGGCACTTTCTATGAGTGGAGTACAAAATAAGGCCTGAAACTCTTATTAAggttatgtgttttattttgtatttttattttttcagcaaaaaaatctgtttttttttttaatttaaaacctttAGAACTTGTCTAAATCAAAATTATTCGATCCTAATTtgtcttattgttattatttttttttttttttagcaattgtTTACTTCTTACAGAGAGCCTAAGATAAAGTGATCagaaattgtatataaatatataaactacaaatatacaaaaacataatttagctTTGCTAATTTGGGGCCAAATGCTATTTTAAGCAAAcattatcaataaaaataagtgcacagtctttttttgtgtttttatttattttttttccactacatttttttttttttgcatttcttttattgCTTTGGTTTGTatagcttttgttttgtttttttagtttgtgtgtAACGTGATATCTTTTGCCAGCTTGTTTATTTCAAGCAAATagaaaatagcaaaaattaaaaaaacaataaacctAAACAATAACTTCTAATTCAGTTGAAGCTCTCTAGCTGGGGACCGGAAACCAATTGTtcagtatttaaaatagattcGACAGTATTACGATGCTTTTAACAttccacaaaataataaaactagcttatctaatgtttttctttttttttgtcttgtttaacTTTCCCTTGAAACAGACCGATTTTGCACCTCTTTATGGAAAGTGCCGCACGCTCATCACTCTACAAGggcatttgttttctttccttacTGCTCAGTCATCGCTCGCGTTCCGTGttcctgtcaaaataaatgcgTTTTAAAGGGATCGCGTTCCGCTCGGCCTTTTGGGAACGGGAATACGATCGCGCGGGCTCCATGTAGCATCCTGTACAGATACGACTAAAGACAGCAGCTACTTTTTGTATCGCATTAGTGCCTCTATACGACCGGCGTCCGACCGCTTCTGCTCTCGAGAACGATTCATTCGGTGCGTTCCGGTGAAAGGCGTGGCCTGAAACGCGTCCAATAAACACGTAGGGAAAATCTCTTCTGTTGCCGCGCTGCTACGCTTAAAAGGTGATTTGAGACCATTTTTCTTGTGCAGTCGTATTACAGTTTCGAATCACTTtacgtgtgtgttttagtgatgaatgtgcatatatatatatctctctctctttttcagtgCGGTGTCGATCCGGCGCGCGTAGTAGTCGAAAAACATAATTGTACGTCGCAATTCTGATACTAATTGGCTGGATGGGGTTTTGTGCCAAATGTCGTTCAACATTCAGGGATTTTAACCAAGTATTgctgtaaacaaacacaaacgaACTGAACTTTTAGCACCCGATACGCGACAGAGACGAGGTCCACGCCGGTTTGTTTCACAATCAGCTGCTGCTGGAAACGGTTTTGCGGCCGGCGAAAGTGTTTGTATCTTGCACATTCTCATAGCTTCCACTGGCCAACTGTAAATAccaaataaatgacttttaaaggA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224954 lncRNA upstream 8555 12045852 ~ 12048265 (+) True G151999
TU224891 lncRNA upstream 50238 12006268 ~ 12006582 (+) True G151976
TU224886 lncRNA upstream 64020 11992590 ~ 11992800 (+) True G151972
TU224834 lncRNA upstream 189279 11867082 ~ 11867541 (+) True G151936
TU224829 lncRNA upstream 221717 11826565 ~ 11835103 (+) False LOC122327134
TU224893 lncRNA downstream 83784 12161655 ~ 12235996 (+) False LOC122327127
TU224896 lncRNA downstream 83784 12161655 ~ 12263031 (+) False LOC122327127
TU224899 lncRNA downstream 83784 12161655 ~ 12263031 (+) False LOC122327127
TU224909 lncRNA downstream 83784 12161655 ~ 12263031 (+) False LOC122327127
TU224921 lncRNA downstream 83784 12161655 ~ 12235996 (+) False LOC122327127
XM_043223499.1 mRNA upstream 30068 12022117 ~ 12026752 (+) True uchl5
XM_043223501.1 mRNA upstream 35184 12019242 ~ 12021636 (+) False glrx2
XM_043222359.1 mRNA downstream 4550 12082421 ~ 12084561 (+) True LOC122327174
XM_043223758.1 mRNA downstream 9294 12087165 ~ 12122997 (+) True p3h2
XM_043222282.1 mRNA downstream 47622 12125493 ~ 12130315 (+) False LOC122327103
XM_043222281.1 mRNA downstream 47640 12125511 ~ 12130315 (+) False LOC122327103
XM_043222280.1 mRNA downstream 47641 12125512 ~ 12130315 (+) True LOC122327103
TU224831 other upstream 223446 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 232765 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 732880 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1134892 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224351 other upstream 1219455 10816135 ~ 10837365 (+) False G151620
TU224914 other downstream 160911 12238782 ~ 12265692 (+) False LOC122327127
TU225002 other downstream 215529 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 267335 12345206 ~ 12345750 (+) True G152043
TU225015 other downstream 267335 12345206 ~ 12345750 (+) False G152043
TU225049 other downstream 331435 12409306 ~ 12423922 (+) True G152065

Expression Profile