RNA id: TCONS_00009948


Basic Information

Item Value
RNA id TCONS_00009948
length 2565
RNA type nonsense_mediated_decay
GC content 0.48
exon number 21
gene id XLOC_005137
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5399680 ~ 5418340 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTCCATGTGGTGCGTGTTTGAAGAGTGGATTCATGCACTCTTCAGTTTTAGGATTAAACTGAATCACACGTTTGAATTATTGTCGACCTTAAGTCAAATCATCGCTCAAAATGGGCCCGGCttctaaaagaaacaagaaaaagaGGCCTAGCTTCAGAAAGTTACTGAAAACCAGTAACCTGAAGCTAGAAAACAAACTGAAGAATCGGCAGTTTAAGCAACAGAGTTCGGCTAAAAAACAACGCAAAGAGCAGAGGAAACTCCACAAGGCCATTTCTGATGTTTCCCATCAGACCCTCAAACCCCTGGAGCGCTACAAGAAGAGACCCGaggatgaagaggaggaggaagagttCCTGGAGTCTCTGCCCACAGATATGATGGATGAAGATGATCTGGAACACATCAGAGCCATCGCACAGAAAGCCTCTTTTCTGACCCGCGACCTCTCTTCATGTGCTCCAGTACATGCCAAAAAGCATAAGTCTGAGCAGGCGCTGGAGAATTATGAGAAGATGCCCAGAAAGATGCAGCAGGAGGAAGAGAAAGAGCTTATTCACTTGCTGCCCATCAAAGACAAGAGTGGCCTGATCCCTCAGAGCATGGAGAAACCTGTTTTACCACaggcagaagaagaagaagaggaaccAAACCAGGAGGTTTACTTACAAAAAGAGGAGGAACCAGAGAGCGCTCCATTGCTAACACCTCAGGAGCAGTTTGAGCAGCGCGCACAGAAACTGATGGAGAAGAAACTGCGCATCGCCGCTCTGTCCTCTGCAATACTGGCAGATCCACATGTTAATATCAAGAAGCTGAAGGAGCTGAGGGCCATGCTGATGGAGACAGACCCCTGCGTTGCCGTCACCGTCAGAAAGTTAGTCATGGTCTCCCTCATGGAGGTCTTTAAGGACATTGTGCCGGCATATCGAATCCGACCTCTGACGGAAGAAGAGAAGGCCGCAAAGGTGAAGAAAGAGACGCTGCAGCTCAGAGAGTTTGAGGAGGGTCTGGTCAGCCAGTATAAGTTTTACCTGGAGGAGCTGGAACAGACAGTCAAAGACTGGAAGCAGAAGAAGGAGAAGAGAAGTCAGGCCGTGTCTCTGCAGTCCTACAAGGGTCTTGCTGAAGTGGCCGTGCGCTGCATCTGTGAGCTGCTGGTTGCTCTGCCACACTTCAACTTCCACAACAACATTATAGTCATGCTGGTGCCTTTGATGAATGACTCCGACAAGAAGGTGTCTGAGATGTGTTGTGAAGCTGTAAAGAAGCTGCTGAAACAGGATAAAGTGGGCCAGGCCTCGTTAGCCATGGTCAAGGTGATCTCAGGAATGGTCAAGAGCAGGAACTATAGGATCAAACCAGTGGTGCTGAACTGTCTTCTGTGTCTGAGAATAAAAGAAGTGGACATGAAGAAAGACACTGAAGATACTGCACCCAAAAAAAAGTTCATGTCATTCAAGGAGAAGAGGAAAAATTTATCCAGGATGCAGCGGAAGTGGAAGAAAGCAGAGGAGAAGCTGCAGAAGGAACTGCTGGAAGCTGAAGCTACAGAGAGCAAGGAGAAGAAAATTAAACTGCACACAGAGACGCTGAACGTCGTGTTCTTAATCTACTTCAGGATACTGAAGAAAGCTCAGAAGTCCGTCTTACTGTCCTCCGTTTTAGAAGGTCTTGCAAAGTTTGCTCATCTGATAAACCTGGAGTTCTTTGATGATTTGTTAGCCGTGTTGTACAACCTCATCACATCAGGGGATCTGACGTATCGCGAGAGTCTCCACTGCATTCTCACGTCCTTCCACATCCTTTCAGGACAAGGTGACGTCCTCAACATTGACCCCCTGAAATTCTACAGCCACTTGTACAGAACGCTGCTGACGCTACACGCAGGAGGAGTGAATGAGGACACTGTGATCGTCCTGCAGTGTCTGGACGTGATGCTGTCCAAGCGCAGGAAGCAGGTGACGCTGCAGAGAGCGCAGGCCTTCCTCAAGAGGCTGAACACTGTGGCTCTACATCTGCTGCCAGACTCGTGTGTGGGCATTCTGGCTGCTAACAGGATGCTGATACCTTCCCCAAGTGTGACATCCTTCTGGATAATGAGACGCAGGGCAGTGGTGTGTATCTGCCAGAGCTGGACGTGCCTGAATACTGCAACCCGCAGAACACAGCACTCTGGGAGCTGCACTTACTCAAGagccaTTATCATCCCGTGGTGAGGAAGTTTGCAGCTCATCTGATGAAGGGAGCTCCTAGTGAAGGATCTGGTGCTCTGGGTGTGGAGCTCAGCagaagGTCTCCGTTACAGCTCTTTGAAGACTACAGTGTGAAAGACATGAGCTTTAACCCACCTGTTGCAGGACCAccttccaagaaaaaggAGTATTTCACCATCGGTCATGCATTCTTACATAGTGAGCTGAGTCGTCAGATTGATGCCGCTCTTCAGGAGGAACCTGAACAGATGAGTCTAGACTTCACATCACCACACACACAGCAGGAACCATGAACAGATGATTACAGTATggtgtaaaataataaatgatatccGCTTTGATTTCTA

Function

GO:

id name namespace
GO:0019216 regulation of lipid metabolic process biological_process
GO:0007517 muscle organ development biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9878 Predicted to enable chromatin binding activity. Acts upstream of or within muscle organ development and regulation of lipid metabolic process. Located in nucleus. Is expressed in several structures, including alar plate midbrain region; brain; head; immature eye; and trunk. Orthologous to human NOC3L (NOC3 like DNA replication regulator).

Ensembl:

ensembl_id ENSDART00000152622

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009944 lncRNA downstream 282702 5116037 ~ 5116978 (-) False XLOC_005135
TCONS_00011080 lncRNA downstream 436438 4960951 ~ 4963242 (-) True XLOC_005134
TCONS_00011079 lncRNA downstream 525011 4872041 ~ 4874669 (-) True XLOC_005132
TCONS_00011078 lncRNA downstream 527764 4870001 ~ 4871916 (-) True XLOC_005131
TCONS_00010796 lncRNA downstream 581820 4817289 ~ 4817860 (-) True XLOC_005128
TCONS_00011081 lncRNA upstream 110847 5529187 ~ 5570170 (-) True XLOC_005140
TCONS_00010797 lncRNA upstream 337863 5756203 ~ 5972569 (-) False XLOC_005143
TCONS_00009955 lncRNA upstream 424299 5842639 ~ 5972503 (-) True XLOC_005143
TCONS_00011082 lncRNA upstream 723942 6142282 ~ 6143462 (-) False XLOC_005147
TCONS_00011083 lncRNA upstream 723942 6142282 ~ 6146296 (-) False XLOC_005147
TCONS_00009946 mRNA downstream 211267 5156332 ~ 5188413 (-) True XLOC_005136
TCONS_00009943 mRNA downstream 279341 5115929 ~ 5120339 (-) False XLOC_005135
TCONS_00009945 mRNA downstream 279505 5116405 ~ 5120175 (-) True XLOC_005135
TCONS_00009942 mRNA downstream 482711 4911907 ~ 4916969 (-) True XLOC_005133
TCONS_00009941 mRNA downstream 558662 4836856 ~ 4841018 (-) True XLOC_005130
TCONS_00009950 mRNA upstream 5768 5424108 ~ 5455936 (-) False XLOC_005138
TCONS_00009951 mRNA upstream 6400 5424740 ~ 5448993 (-) True XLOC_005138
TCONS_00009952 mRNA upstream 74464 5492804 ~ 5505205 (-) True XLOC_005139
TCONS_00009953 mRNA upstream 169007 5587347 ~ 5663189 (-) True XLOC_005141
TCONS_00009954 mRNA upstream 301276 5719616 ~ 5728755 (-) True XLOC_005142
TCONS_00009917 other downstream 1098304 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009915 other downstream 1098305 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009914 other downstream 1101396 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009912 other downstream 1113200 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009859 other downstream 3909092 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009972 other upstream 1805449 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009977 other upstream 2084622 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009989 other upstream 3025564 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009996 other upstream 3441853 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010002 other upstream 3631192 9049532 ~ 9051178 (-) False XLOC_005182

Expression Profile

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