RNA id: XM_043222482.1


Basic Information

Item Value
RNA id XM_043222482.1
length 1711
RNA type mRNA
GC content 0.45
exon number 7
gene id cirbpb
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10075032 ~ 10080097 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACGTGCCACGACGTGGACACGCCCACAGAGATCTGCAGTCACGTGAAGCCTTTAAACTGGCGCCATTTTCTGTGCGAGCTCCTATTCTGCTGCAGTCGGCGTCGCGTCCTGCACTCTTTTCAGTGTTCGAGACAACCTGAGCACGTGATTCAACATGTCTGACGAGGGAAAGCTCTTCATTGGTGGTCTGAGCTATGATACCACAGAGCAGTCCTTAGAGGAGGCTTTCTCCAAATACGGATCAATTGCCAAAGttGATGTAATCCGGGACCGCGAGACAGACCGGTCTAGAGGCTTTGGCTTTGTGACATTTGAAAATCCAGAGGATGCAAAGGATGCTATGGCTGCAATGAATGGAAAGTCTGTTGATGGCCGCATGATTCGTGTTGATGAAGCTGGCAAATCTGGTAGACGGTCCGGTGGTTTCAGAGGAGGTTCTGGAGGCGGCAGGGGGTTCTTCAGGGGAGGCAGAGGTGGTGGAGGATATGGTGGAGACCGCAGCTATGGGGGTGACAGAAGCTTTGGTGGTGACCGGGGCTACGGCGGAGGTGACCGATCATATGGGGGTGGAGATAGAGGCTATGGTGGAGGAGAGAGAAGCTATGGTGGAGGTGACCGGTCCTATGGTGGTGGTGGCGGCGGCGGATACTCCAACAGGAGTGGCGGATACTCCGGTGGCAGCGGCGGTGGATACAGGGATAACAGAAGCCAGGGTGGATATGACCGTTCTGGTGGATCCTACAGAGACAGTTACGACAGCTATGCTTCAcacgagtaaaaaaaaatcctgattgCAAGATCATCCCTTCGCTGGCTGTATATAAAAAGATGCGCTCTTGgaagaccttttttttgttttacttttctttacGTTTTGTGTTCTGATTCAAATGTTCTATTAAAGACACTCCTTTTTTACCGTGTCAAGTATCCGCAGGATGTTCCTCTCATTGAGGAGCTGCCTAAAATCCATGAGCATTCACTTACTGTACGAGTTTCAAGCCCTGTGAGGCTACCTGTATCTGCCATTTTTACCTTGCGATTTGTGTTATAGATGCTCACGGAGGTTTGAAATTGtcctttgttttcctttttagtgTGTGTTTAAGAAATGTCTCTGAAACCATGCGTAAAAATTGACCTGTCCAACACAGCCTGATAGCTTCTAAAAACCAATTTCCTCAAAGATCTTTGGACCAATTTCTTAATATCGGCTCACTTAAAGTGCTTAGAGgagcatttgcatttaaacaattttaaaacggAACCTTGAAAATATTCTAATCTGATCCTCCAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATTGCTCCTTGCCACCTTCATTTTGTGATGCATTCCTTTAGTGAAGCAAGGTAGGCATTTTGCATTGGAGTTGTCTCCAGCAAACCTCCTTGATATTGCTAAAGATTTGTAAATATTCATTATCCAAAGAGTAAACCACTGGGTCATTCCGCCTCTCGTTAGGACCGGTGCCCCAAGGTGCTTTATTCTTTGACCAgtctaaattttattttttaaaagtatgctcTACTGTGGACTGAACTTATCCTCTTAAATGTCAAGATTTTGTTCCTCCTTGGAAAGAAATGTGCTCTGTTCTGTATATCAACACCtcagaatcttttttttctttttgtattaatCTGGCTTCATGAAGCTCATTAAAAAATGGTTGGAAAATG

Function

GO:

id name namespace
GO:0009409 response to cold biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224106 lncRNA downstream 4019 10053918 ~ 10072892 (-) True G151439
TU224111 lncRNA downstream 48472 10023218 ~ 10028439 (-) True G151444
TU224082 lncRNA downstream 93764 9963097 ~ 9983147 (-) False G151425
XR_006247729.1 lncRNA downstream 211023 9819693 ~ 9865888 (-) True LOC122327858
TU223934 lncRNA downstream 455746 9616790 ~ 9621165 (-) True G151319
TU224138 lncRNA upstream 109735 10189830 ~ 10194857 (-) True G151468
TU224127 lncRNA upstream 164823 10244918 ~ 10249842 (-) True G151457
TU224186 lncRNA upstream 295078 10375173 ~ 10375615 (-) True G151507
TU224187 lncRNA upstream 295546 10375641 ~ 10375960 (-) True G151508
TU224252 lncRNA upstream 362392 10442487 ~ 10442738 (-) True G151569
XM_043223412.1 mRNA downstream 29037 10044222 ~ 10047874 (-) True si:ch211-212d10.2
XM_043223898.1 mRNA downstream 81904 9994192 ~ 9995007 (-) True tssk6
XM_043223911.1 mRNA downstream 157995 9913423 ~ 9918916 (-) True tmem161a
XM_043223149.1 mRNA downstream 181944 9890550 ~ 9894967 (-) True tmem221
XM_043223151.1 mRNA downstream 189052 9886173 ~ 9887859 (-) True rfxank
XM_043223516.1 mRNA upstream 71367 10151462 ~ 10173317 (-) False midn
XM_043223515.1 mRNA upstream 71367 10151462 ~ 10173316 (-) True midn
XM_043223518.1 mRNA upstream 102943 10183038 ~ 10187587 (-) True atp5f1d
XM_043223055.1 mRNA upstream 201927 10282022 ~ 10321663 (-) True polrmt
XM_043223900.1 mRNA upstream 313917 10394012 ~ 10396169 (-) True LOC122328192
TU224081 other downstream 113285 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 573905 9498680 ~ 9503006 (-) False gpx4a
TU223882 other downstream 575229 9498680 ~ 9501682 (-) True gpx4a
XR_006247698.1 other downstream 935052 9013553 ~ 9141859 (-) False nfia
XR_006247701.1 other upstream 206483 10286578 ~ 10321663 (-) False polrmt
TU224207 other upstream 339032 10419127 ~ 10422335 (-) True micos13
XR_006247709.1 other upstream 1094048 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 1099609 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 1268285 11348380 ~ 11348451 (-) True trnaq-uug_21

Expression Profile