RNA id: XM_043222486.1


Basic Information

Item Value
RNA id XM_043222486.1
length 2853
RNA type mRNA
GC content 0.50
exon number 2
gene id b3galt2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11997220 ~ 12003856 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcgGAGCGGCGTCATCTCAACAGCTGCTTTCCCTCCCACTAGCCCACCCCGCGCATCATTTGGGGAAGAAGAGAGGCTTCGCTGCCTCCTACTGCACTTCAGGGTCGTGTTCCGTTAGACCAGGCACGGAGAGGGCCTTTCGCTGCCGTTATTCTGGCGGAAAGAATGTTCCCCCCCGCGTTACTTCACTGGACGTACCTCGCAGTGACTGCAGACGAGCGACGTagaacgtgagcgttgaagttgtttttttttttcttcacatccGTTCCCGCCTCTAGTCGATGTTTGTATTTGCGAGGAAACCACGGGCGTTCGCCGTTTAGCGAAAGTAGCGGTATCGGCGACAGCGCCACGGACAAATTCGCGGGAGCTCAAGCCTAATGTGTGCGGTGCCAGACAACAATAGCTCCTGACAGATGGAAGGAGGGGGTCTGCTCGACGGATTCAAGATGGAAAACGAAGAAATGCGCCTAAGTTCTTGCGAGTAGCGCGAAGTGAAGGGGTGGTTTGTCGTCGGGGGCTTTTTTTGGTAGCGCTGGAGGGTATGATGGCGCGCGGTGCGGGTCCACAGACGGAGCGCGCATCTTTCCGCTCTGTCACAGAGTGAGAGCACAGAGACATCAGTCTGAGGAAGCAGTCGTCCTTCAGAAGGGAACTGCCCCAAAGCATGACCGTCTGTCACTGGGGAGGGTCAGAGAAACGCATTCCTGCAACTCTCATGAACAGTTTGTCATCTCCCTTGTAGGTCCACCTGCGGCCCTGAACACACCCATCTGCCAGCTCAGATAACCCTCAGGCTGTTTGCAACACATGTTTGATGTGATTGGTTGTGACCGCCGCGCTTTGCTAAGCAGCCCCGCTCTACATCATGCAGTGGCGTCGGCGACACTGCTGCCCCATCAAGATGACCTGGAATGTCAAGCGGTCACTCTTCCGCACACATGTAGCAGGCCTTCTCTCGCTGGCCTCACTCTTCGCCCTCTTTCTCATCTACTGCCACCAGGATTTGCTGCAGGGCCGGAGTTGGTTGCGAGACAACCCCTTGGTTTACACCATGCGGGGTTTGCGCCCCCACAAGGAGCGTGCAAAGGGAAACCAAAGCTCACTGCGAAGCCTCTGGAAAGACAACAGCTACGTGCTGCCCAAACCGTCTGTTAACTTCAATTTCACTTCTCACCAGGCAGAGATCACTGCCCGGGGGATTGTGGGATTGGAGATCTCGCCGAGCGGGAACAACTCGACCACTAACGGCAACACCAAGAGCTTGCACAGGGAAATGGGAGTGGGAGGTCGTCTGGCAGCCCAGCCTTATCACTGGCTGCTTAATGAGCCCTACAAGTGCAACGAAAGCAGTCCCTTCCTGGTTTTGCTAATTGCTGCCGAGCCAAGGCAGTTGGAGGCAAGGAATGCCATCAGACAGACCTGGGGCAATGAGAGCGTGGCCTTGGGTTACGGGTTCGTGCGACTCTTTCTGTTGGGAAGGATACCCAATGCGTATCCCCAGAGCTCCATTGAGGAGGAGAGCTTGCAGTACCATGACATCATCCAGCAGGACTTCTTGGACACCTATTACAACCTTACCATCAAAACACTGATGGGCATGAGCTGGGTTGCTCGCTATTGCCCACACGCCCGCTATGTCATGAAGACGGACAGTGACATGTTTGTCAACACAGAATATCTCATCCAAAAGCTGCTAAAGCCAAACATGGCACCTCGACAGAATTACTTCACAGGCTACCTAATGAGAGGCTACGCTCCCAACCGCAACAAGGACAGTAAGTGGTACATGCCACCAGAGCTGTATTCCAGCGAGAGATATCCTATATTTTGCTCCGGGACAGGCTATGTGTTCTCTGGGGACATGGCGGCGAAAATCTACAATGCCTCGTTGAGCATCCGTCGCCTTCACCTCGAGGATGTGTATGTAGGAATCTGTCTGGCCAAACTGCGGATCGACCCAGTGCCACCACCAAATGAGTTTCTCTTCAACCACTGGAGAGTGTCGTACTCCAGCTGCAAATACAGTCACCTGATCACCTCTCACCAGTTCCAGCCCAACGAACTCATTAAATATTGGAGTCACTTACAAAGCAACAAGCACAATCCTTGCCTTAACATGGCGAAGGATAAGAGCGGGCGACCGCGTCATAGGAAGTTGCAGTGGGAAGGTCTTCGGTGATTAGTCAGGGCTCAGGGTGCAGTAGTATTGCCACAGCATGTGCAAAATGCAGCAGTCTATGAGGTAGGGAACAGCACAGTGTTTTTGGTATTGTgaatcaaaactatttttttaatttcagagaGATGTTATGTATTGTAATCCTGTCTTTTTAAAGGGAAGTGAGAGACATCTGCGCGTGCAGTATCTAGCATGCACAACAACAACCATCCAGTGGCGAAGCCGCCATTTTCAGGTGCCAATTAACCGAGACATATAAAGAGGTTACCGAACTTCCTCTTCAAGCTAACGTTCGAACGGTATTACTAAGGGCCAATTTTATCGAGATCCTCACTGTTTCTGtaaacaaaagaagaagaaaaaaatggggAATATCATATGGTGGTGTATCTGTACTGTGACGCATTTGATTCTCAATGATGTCCACCCCCGACATTATGAGATGATGTTGATTTTTCTATCTACCTACAACCTTCGAATGGTTTACAGTaaccaaaccaaattaaaaacagtatgtgtaaaagaaaatatatggaATTTTAATTGCATCATAGATGTCagatatgataaaaataatatttttcaaagctTTACAATGACTAAATATACAGGTCTGCCCTTGCTTAGGGCAagttaaaactatttattaaatgtatttcttaagCACA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K07820 B3GALT2; beta-1,3-galactosyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224886 lncRNA upstream 4420 11992590 ~ 11992800 (+) True G151972
TU224834 lncRNA upstream 129679 11867082 ~ 11867541 (+) True G151936
TU224829 lncRNA upstream 162117 11826565 ~ 11835103 (+) False LOC122327134
TU224830 lncRNA upstream 162117 11826565 ~ 11835103 (+) False LOC122327134
XR_006247734.1 lncRNA upstream 210509 11777483 ~ 11786711 (+) True LOC122327899
TU224891 lncRNA downstream 2412 12006268 ~ 12006582 (+) True G151976
TU224954 lncRNA downstream 41996 12045852 ~ 12048265 (+) True G151999
TU224904 lncRNA downstream 44562 12048418 ~ 12249985 (+) False LOC122327127
TU224906 lncRNA downstream 44562 12048418 ~ 12276608 (+) False LOC122327127
TU224925 lncRNA downstream 44562 12048418 ~ 12267166 (+) False LOC122327127
XM_043222318.1 mRNA upstream 162086 11827299 ~ 11835134 (+) True LOC122327134
XM_043222519.1 mRNA upstream 172013 11822938 ~ 11825207 (+) True LOC122327289
XM_043223904.1 mRNA upstream 204055 11792550 ~ 11793165 (+) True LOC122328196
XM_043223519.1 mRNA upstream 204762 11787586 ~ 11792458 (+) True LOC122327862
XM_043223314.1 mRNA upstream 461479 11522004 ~ 11535741 (+) True LOC122327737
XM_043223501.1 mRNA downstream 15386 12019242 ~ 12021636 (+) False glrx2
XM_043223504.1 mRNA downstream 15403 12019259 ~ 12021636 (+) False glrx2
XM_043223503.1 mRNA downstream 15498 12019354 ~ 12021636 (+) False glrx2
XM_043223502.1 mRNA downstream 15499 12019355 ~ 12021636 (+) False glrx2
XM_043223500.1 mRNA downstream 15500 12019356 ~ 12021636 (+) True glrx2
TU224831 other upstream 163846 11827344 ~ 11833374 (+) False LOC122327134
TU224828 other upstream 173165 11822934 ~ 11824055 (+) False LOC122327289
XR_006247707.1 other upstream 673280 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 1075292 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 1159855 10806052 ~ 10837365 (+) True G151620
TU224905 other downstream 6613 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 44562 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 234926 12238782 ~ 12265692 (+) False LOC122327127
TU225002 other downstream 289544 12293400 ~ 12294717 (+) True G152032
TU225014 other downstream 341350 12345206 ~ 12345750 (+) True G152043

Expression Profile