RNA id: XM_043222489.1



Basic Information


Item Value
RNA id XM_043222489.1
length 4543
RNA type mRNA
GC content 0.48
exon number 18
gene id mark1
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14314440 ~ 14351800 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCAATGCAGGAGCCTGAGCtccacacgcgcacacacgcacgcgcgcgcacgcacgcacacacacgcactcgcTCTGTCCGCGCATCCGCAGCGTCGCGTcgctccgtctctctctctctcgctcgcggCTGACGCGGGCCGCTCCTGGATATGTGCACGTTATAGGAAAGCCGCCGCCGCATCGTAGGTCGAAGGCCAGGAGACATGCCGGCGTGACGGGCATCGGATATCCCTATCTTCCGCGCTATCTTCGCTAAGCCCGGCTCCGCGGCTCTGCTGTACCGAGCGCCGGTGCTGGAGCGAGCGGCCTGTAAACACAAGATGTCGACCAGAACGCCATTGCCCACCGTTAACGAGCGCGACGCCGAGAATCACACATCTGTCGATGGCTACACGGACACACCAGCACCGCCCACGAAATCAGCGAGTCGACAGAGTCTCCCGCGCTGCCGCAACTCAGTGGCGTCCATCACAGACGAACAACCTCACATCGGCAACTACAGACTGCTCAAAACCATCGGCAAAGGGAACTTTGCCAAAGTCAAACTTGCTCGCCATGTTTTAACAGGAAGAGAGGTAGCGGTGAAGATCATTGATAAAACTCAGCTGAACCCCACAAGTCTACAAAAGCTCTTTCGGGAAGTGAGGATTATGAAGGTCTTAAATCATCCTAATATAGtTAAGTTATTTGAAGTCATTGAAACAGAGAAGACGCTTTATTTAATAATGGAGTATGCAAGtggagGTGAAGTGTTTGACTACTTAGTCGCTCATGGGAGGATGAAGGAAAAGGAAGCCAGAGCAAAGTTTCGACAGATTGTGTCCGCAGTGCAATATTGCCATCAGAAGAGAATAGTCCACAGGGATCTCAAGGCTGAAAACCTGCTGCTAGACGCGGACATGAATATCAAGATAGCGGACTTCGGCTTCAGTAACGAGTTCACCATCGGGAGTAAGCTGGACACGTTCTGTGGCAGTCCTCCATACGCAGCTCCTGAGCTCTTCCAGGGAAAGAAGTACGACGGGCCAGAGGTGGACGTTTGGAGTCTGGGAGTCATTCTCTACACGCTTGTCAGCGGCTCGCTTCCCTTTGATGGACAGAATCTGAAGGAGTTACGAGAGAGAGTTTTGCGAGGGAAGTATCGTATACCGTTCTACATGTCCACAGACTGTGAAAACCTTCTGAAGAAACTGTTGGTGCTTAATCCAGGCAAGCGTGGAAGTCTAGAGCAAATCATGAAGGACCGCTGGATAAATGTAGGCCACGAGGAAGAGGAACTGAAGCCGTATACAGAACCTGAGCCAGACTTCAGTGACACCAAACGGATagAGCTGATGATCACTATGGGTTTCCCCAAAGATGAGATCAACGAGGCATTAGTAGGGCAGAAGTATGATGAGGTCATGGCCACATATCTTCTGCTGGGCAGGAAACCTCCAGAGTTTGAAGGAAGCGATTCGCTGTCCACCACAAACCTGTGTCAGAGGTCACGACCCAGCAGCGACCTGAACAACAGCTCTACGCAGTCGCCCGCACACTCCAAAGTCCAGCGCAGTATCTCAGCCACACAGAAACAGCGGCGATTCAGCGACCACGTTGCTCCGTCCATACCTCCGGCCGTCTCCTACACCAAACGCTCTCAGGCCAATAGCGTGGAGGGAGAGAAGAAGGAGGAGTGGGACGCGTCCCGTAAGTTGCCCTCTTCCAGCTCGAAAGGGGACATGGCCGTCTCTCCTCTGGTGGCCCAGGAACGCAGGAAGTCGTCCACAGCTTCAGGGAATAGTGCTGCTGGCGGAATGACGAGGAGAAATACGTACGTTTGCGAGCGATCCAGTACAGACCGCTACTCAGCCATACCCAACGGCAAAGACAGCAGTTTGACGGAGATGTCTGCTTCGGCCAGTGGATCTTCCTCAGTGTCTCCAGGAGCGTCCTCTGCACTGGCGTCCACTCGACCGAGGCATGTGAAGTCCATGTCCGCCTCAGGCCACCCCAACAAGTCTCCGCTGCCGCCCATCGAGGACAACGCTGAATTCAAGGGCTCTAGCCCTAGGGCTCCATCCGCGTCTCCGTCAGCTCACAGCATCAGCAGTATGACTCCGGACCGGACCCGTTTTCCTCGGGGCACGTCCAGCCGCAGCACCTTCCACGGGGCGCAGCTCAGAGACCGCCGCAGCGCCACATACAACGGGCCTCCTGCTTCGCCCACGCTGTCCCACGACACGGGCGCCCTTGCCCAGGCCCGCCGGGGAACCTCATCTGGATTCATCAGCAAGCTCACCTCCAAGTTTGTGCGGAGGGTACCCAGTGAAGGAGAGGCCCGCGGTCGGGCGTACAGTTTGAGGAGCGGATCCGGAGAACCCAAGGAGGAAGGCCGCGACTCGAAGCCCAGATCACTGCGTTTCACCTGGAGCATGAAGACCACCTCGTCCATGGAGCCGGGAGACATGATGCGAGAGATCCGCAAGGTGCTGGACGCCAACAACTGCGACTACGAGCAGCGCGAACGCTTCTTGCTATTCTGCGTGCACGGCGACGCGCGACAGGACAGTCTCGTCCAATGGGAGATGGAGGTGTGCAAACTGCCCCGCCTGTCTCTCAACGGCGTGCGCTTCAAACGCATATCGGGGACGTCCATCGCCTTCAAGAACATCGCTCCGAAAATTGCCAATGAGCTCAAGCTGTAAGCAAAGGGTTCGGAAAAAACACACGACTGTAGGGAACACTAAAAAAGGAACCTCACCAGGAAGTCTGAGCACCATTTTGAGTTACTGCTTCTGTAAGCTACTGCTGTAATGTGTAGTGGAGATAAAAATACGAATGCAAAAcgatgaaaagagaaaaaaacgcCCTAGCCTGATCTTCATGACCTCTCGCATACACGCCTGGTTAAATCAGCCATCTTGCAATAATATCAAAACCCTTTCGGGGTCGGCAGGACAGACATCTGTCGAGCGAATTATCGTAACGGACTTAAAATCGACTTTTCCACATGTACAGTTAAGATAtagaatgtttttgttgtattgaaTTGATGATAGCGTTGTATAATACAAGACTTTCAGCCTACTTCTGTGGAGGTGTTGTATAGTCACTATTGAGCTCTgtacagaaaaattatgttcaaTGTGTCATACTCGTTTAGTtgctttcttcattttttttttttttttttttttagattttgagACCACTCAGTTTTAACGGTTGTTTTGTAACTTatcaacatttgtttttaaagggacagttgaTCCAACAATGGAGATTCTGCCGTTTTCATGCGGTCGCAAGCCtgtatgttgttatttttcatgGACGTACaccattttgaaaaattatgcAGCTTTTTCTGACTAATAAGCGccaaaaattataatgataataataataatccactCAAAGCAACTTCTGTGCAATAGCCATACGTTACACTTTGTGTAACAATTCAAAATCTAAGTTGCTAATCActgaaaatgtgtaaaaaaaaaaataaaatatataataacagcaTGCACGGCAGGACATGAGGGCAAGTAagacagaagtttcattttggATGAATTATCCTTTTAACTCAGAGTGAGAATTAGATGTGATCATAACATCAAATTAACGAGTAAGTGTTTTGTAGAGCAGGCAGTGTGTTTTCCCCCGATCCAGGTGGTTTTGGATGTACAAATCGACTAGAAACTAGTAACCGAACGTCGACATTAACATTCCGTACAGAACATACACCGATACTACTAACATCGTGGAGCTGTAGTGCAGAAATCCTGCAGCGTGATTGGAGCACGAGTGGCCAGTTCAGCAACACCGAGTGTTTTCCTTCGAAATAGACAAAACGAAAAAAGGCTTCAACTGTAGTAACTCCAAGACGTTTATTTATTAAGCCATTTTATGCCTTCCTGTTTTATTAACTGTAGAAATTCATCCAGAGaatgcatgactttttttttttttttttttttgtaaactgttatttgttttgtaataagtggtgatgatgatgatgggtTACGACCACTCGTACTGGTACTTTCTACTAGTTCTTTTGTACTGAAGTATCGAAGGTTAAATGTGCAATGCTGTCTGTTGTATTACTGTTATGTTATGCTGACTAAAGAGGTTGTGACCGCACACTTTCAAGGGAAGATGAGGTCAAGTTTGCGTAGTTGGAGGAAAAAAGGATTAGtgactaaaaatattaaagggtAAAGCTGTGATGAAAGCTCTGAGAGGCATTGAATGTTCGAATGTCAACTGTGATGTTCCATTTTGTGACGGTACATTtccagtttttatttagttttatatttagagGCTGCACGGATGAAACTGTTTGGACGGGAAGCGAGCTGAAGGCTGAGGATCtccaaaaaatgcaattaaactcTTCAACACATTTCATCCTTCCACACACTCTTCCCATTTATTCTCTGGACATGGTACTGTACATTTCTGCGGAAAAATCCCTTGGGCCACTGTGGTTCAGTCCCACTGGAGCACATTAAAGCTTACTTGAAATGAGTCTTTgaactaaaa

Function


GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005524 ATP binding molecular_function
GO:0008009 chemokine activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU226081 lncRNA upstream 1335 14312566 ~ 14313105 (+) False ptk7a
TU226064 lncRNA upstream 142185 14171944 ~ 14172255 (+) True G152729
TU226063 lncRNA upstream 142967 14171163 ~ 14171473 (+) True G152728
TU226062 lncRNA upstream 164946 14149176 ~ 14149494 (+) True G152727
TU226061 lncRNA upstream 166776 14147217 ~ 14147664 (+) True G152726
TU226125 lncRNA downstream 106349 14458149 ~ 14462660 (+) False G152767
TU226120 lncRNA downstream 110955 14462755 ~ 14464082 (+) True G152766
TU226121 lncRNA downstream 110955 14462755 ~ 14464082 (+) False G152766
TU226114 lncRNA downstream 114002 14465802 ~ 14467522 (+) True G152765
TU226118 lncRNA downstream 114002 14465802 ~ 14468653 (+) False G152765
XM_043223561.1 mRNA upstream 1304 14283892 ~ 14313136 (+) True ptk7a
XM_043223383.1 mRNA upstream 33802 14273885 ~ 14280638 (+) True soul4
XM_043223038.1 mRNA upstream 43615 14248496 ~ 14270825 (+) True klc4
XM_043223037.1 mRNA upstream 53357 14248496 ~ 14261083 (+) False klc4
XM_043223349.1 mRNA upstream 67523 14202129 ~ 14246917 (+) False si:ch211-126j24.1
XM_043222360.1 mRNA downstream 28051 14379851 ~ 14392902 (+) True elavl2
XM_043222361.1 mRNA downstream 28051 14379851 ~ 14392902 (+) False elavl2
XM_043222325.1 mRNA downstream 89734 14441534 ~ 14456997 (+) True hps3
XM_043222326.1 mRNA downstream 89735 14441535 ~ 14456997 (+) False hps3
XM_043222276.1 mRNA downstream 137983 14489783 ~ 14492223 (+) True tm4sf4
TU226044 other upstream 271919 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 347215 13967107 ~ 13967225 (+) True LOC122328230
TU225879 other upstream 632493 13575738 ~ 13681947 (+) True G152584
TU225846 other upstream 896033 13417464 ~ 13418407 (+) True G152565
TU225829 other upstream 930663 13383153 ~ 13383777 (+) True G152558
TU226124 other downstream 106349 14458149 ~ 14462660 (+) True G152767
TU226184 other downstream 334704 14686504 ~ 14691808 (+) True G152808
TU226683 other downstream 860658 15212458 ~ 15216942 (+) False kif14
TU227010 other downstream 1652764 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 1770640 16122440 ~ 16122512 (+) True trnaa-agc_18

Expression Profile