RNA id: XM_043222509.1


Basic Information

Item Value
RNA id XM_043222509.1
length 2475
RNA type mRNA
GC content 0.50
exon number 21
gene id capn2b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12670807 ~ 12681564 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAAGTTTGGGGCGGAGAGTCGCGGTGAACTAAGTTGAAGGATCGAGACGTTTTGACATTTCTCTGATATCGTTTGGGCTCCTCGgaagcggaaaaaaaaaatgtcaggagTCGCCTCAACCCTGGCCAAGAAGAGAGCGCAGGCTGCGGGCTTCGGGACTAACGCCAATGCCAGCAAATACCTGAACCAGGACTACGAGGCGCTCAGGAGACAGAGCCTCGGCGCGGGGACCCTGTTCTCGGACCCGTATTTCCCAGCCGCACCCGAATCCCTGGGCTTTAAAGAACTCGGACCCAGCTCGTACAAAACAAGAGGAATAACCTGGAAGAGACCTCGGgAGCTGTGCTCAAATCCACAATTCATCGTCGGCGGAGCCACACGGACGGATATCTGTCAAGGAGCTCTGGGTGACTGCTGGCTGCTAGCGGCCATTGCCTCTCTGACCCTGAATGAAGATGTTCTGGCGCGAGTGGTGCCCAATGGACAAAGCTTTAGTGACAATTATGCAGGAATCTTCCATTTCCAGTTCTGGCAGTTTGGGGAGTGGGTGGATGTCGTCATCGATGACCGGCTGCCGGTGAAAGACGGCGAACTGGTTTTTGTTCACTCCGCCGAGGGAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCGAAGGTTAATGGGTGTTACGAAGCTCTGTCTGGAGGATCCACCAGCGAGGGTTTCGAGGATTTCACCGGAGGCATCGCTGAGAGCTACGAGCTGAGCAAAGCTCCTTCCAACATGTTTCAGATCATCCAGAAAGCCCTGGAGGCTGGTGCTTTGCTGGGCTGCTCCATTGATATCACTAGTGCGGCTGATTCAGAAGCCGTCACCCGTCAGAAGCTGGTGAAAGGCCACGCTTACTCGCTCACCGGGGCGACCGAGGTGAACTATCGTGGCCGCAGGGAGAAACTGGTTCGCATGCGCAACCCTTGGGGGCAGGTGGAGTGGACCGGAGCCTGGAGCGATGGttCATCCGAGTGGAACAACATCTCTTCGGAGCGGCCGAACGCCAGCGCCGAAGATGGAGAATTTTGGATGTCATTCACAGATTTTCTCAGCCAATACTCTCGTATTGAGATCTGCACCCTGACGCCGGATGCCATCACCAGCGATTCGGTTAAACACTGGGCCGTGACCAACCACGACGGCACATGGAGGAAAGGCTCCACCGCTGGAGGCTGCAGAAACAACCCTTACACATTCTGGATGAATCCTCAGTATGTGATTAAGCTGAACGAAGAAGATGATGATCCAGGTGATAACGAGGTAGGCTGCAGTTTCGTGGTGGGTTTGATCCAGAAGAACCGGCGGCGTCTGAGGAAATCTGGAGAGGACATGCACACAATCGGCTTTGCCATTTATGAGTTACCTTCACAGTTTCACGGTCAGCGTGAAGTGCACCTCGATAAGAACTTCTTCCTGACGCACGCTCAGAAAGCTCGCTCAGAGACTTTCATTAATCTAAGAGAGGTCTGCACGCGCTTCAAGCTGCCTCCTGGGGAGTACCTCGTCGTGCCGTCCACCTTCGAAGCCAACAAGGACGGAGACTTTTGCCTGCGCGtcttttctgaaaaacagaccGAAACACTACCGTGTGATGACCCTGTGGATGCTGAATTACCTGATGAGACTGTCTCAGACAGTCAAGTCGATTCTGGATTCAGAGGCATGTTCGTAAAACTCGTCGGAGCTGACATGGAAATCTCAGCCTCAGAGCTCTCGACTATCTTAAACAAAATCATCGCAAAACGAACTGACATAAAGACGGACGGCTTCAGTTTGGAGACCTGTCGTGTCATGGTGAACCTCATGGATGACAGCGGGAATGGAAAACTAGGTTTGGGAGAGTTCGCTACTCTGTGGAAGAAAATTCAGCGATACCTTGGAATTTACAAGAAGAATGACATGGATAATTCAGGAACAATAAGCACTCCAGAGCTGCGTTTGGCGCTGAAAGAAGCCGGTTTCACTCTTAATAACACTATATTCCAGCTACTGGTAGCACGTTACGGTGAGGCGGACATGACTCTCGACTTTGATAACTTTGTGGCCTGCCTCATGCGTCTGGAGATGATGTTCCGCGTATTCAAAAAGCTGGATCCCCATAAAAGTGGCTTCATTGAAATGGACTTTCAGCAGtggctGAACTTCACTATGATTTAGGGGAATCATCTCCAAACTCCAGAGCGAAAAAGGattacatgttttaaattgtatttactttcatttttttcagttgtttattgCACTTTCGACCAGTCTTACTTCCAAAGTGTTGCATGATTTTACTGCGTTTGACATTGGCACACTATTTTCGTTTACAAATGCAAGCATCcttaaacaaggagaatcttaaccactgtataataaaaaaaaagtgcgtgTGAATTGTTATGAACGTTTTCTCtcaaaatgtcataattaaacacttttgacACTGTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225514 lncRNA downstream 125680 12544901 ~ 12545127 (-) True G152351
TU225498 lncRNA downstream 191355 12474768 ~ 12479452 (-) True G152341
TU225496 lncRNA downstream 235851 12434581 ~ 12434956 (-) True G152340
TU225495 lncRNA downstream 243835 12426756 ~ 12426972 (-) True G152339
TU225488 lncRNA downstream 244719 12418358 ~ 12426088 (-) True G152333
TU225573 lncRNA upstream 1526 12683090 ~ 12683385 (-) True G152363
TU225597 lncRNA upstream 66658 12748222 ~ 12748440 (-) True G152386
XR_006247716.1 lncRNA upstream 262730 12944294 ~ 12953144 (-) False LOC122327774
XR_006247715.1 lncRNA upstream 262730 12944294 ~ 12953140 (-) False LOC122327774
TU225669 lncRNA upstream 262868 12944432 ~ 12951901 (-) True LOC122327774
XM_043222507.1 mRNA downstream 113 12659174 ~ 12670694 (-) False capn1b
XM_043222508.1 mRNA downstream 117 12659174 ~ 12670690 (-) False capn1b
XM_043222506.1 mRNA downstream 117 12659174 ~ 12670690 (-) True capn1b
XM_043223531.1 mRNA downstream 12659 12653941 ~ 12658148 (-) True sde2
XM_043222258.1 mRNA downstream 17199 12650198 ~ 12653608 (-) True wdr83
XM_043222323.1 mRNA upstream 57159 12738723 ~ 12746888 (-) True b3galt11
XM_043223559.1 mRNA upstream 68694 12750258 ~ 12751462 (-) True LOC122327893
XM_043222425.1 mRNA upstream 72233 12753797 ~ 12756479 (-) True b3galt10.1
XM_043223497.1 mRNA upstream 75147 12756711 ~ 12771161 (-) True glis2a
XM_043223182.1 mRNA upstream 181265 12862829 ~ 12867566 (-) True mcrip2
TU225529 other downstream 103462 12560873 ~ 12567345 (-) False LOC122328185
TU225397 other downstream 525232 12142842 ~ 12145575 (-) True G152276
TU225293 other downstream 621276 12045469 ~ 12049531 (-) True si:ch211-117l17.6
unassigned_transcript_2544 other downstream 1322356 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247708.1 other downstream 1482129 11179704 ~ 11188678 (-) False rex1bd
TU225672 other upstream 224585 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 224683 12906247 ~ 12914226 (-) False cxcl12b
TU225939 other upstream 896237 13577801 ~ 13689607 (-) False LOC122327865
XR_006247594.1 other upstream 1143805 13825369 ~ 13829699 (-) False adra2a
XR_006247564.1 other upstream 1715814 14397378 ~ 14425100 (-) False LOC122327056

Expression Profile