RNA id: XM_043222517.1


Basic Information

Item Value
RNA id XM_043222517.1
length 2568
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC122327288
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11804815 ~ 11815578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAAGTTTGGGGCGGAGAGTCGCGGTGAACTAAGTTGAAGGATCGAGACGTTTTGACATTTCTCTGATATCGTTTGGGCTCCTCGgaagcggaaaaaaaaaatgtcaggagTCGCCTCAACCCTGGCCAAGAAGAGAGCGCAGGCTGCGGGCTTCGGGACTAACGCCAATGCCAGCAAATACCTGAACCAGGACTACGAGGCGCTCAGGAGACAGAGCCTCGGCGCGGGGACCCTGTTCTCGGACCCGTATTTCCCAGCCGCACCCGAATCCCTGGGCTTTAAAGAACTCGGACCCAGCTCGTACAAAACAAGAGGAATAACCTGGAAGAGACCTCGGgAGCTGTGCTCAAATCCACAATTCATCGTCGGCGGAGCCACACGGACGGATATCTGTCAAGGAGCTCTGGGTGGTGTCTCCGAGCAAACAACGCAATTTACTGAGTCACAGATTCCTTCTCGACCTCTTCTCCTTAAATTAATACTTCAAACACGGGATATCTGTGACTGCTGGCTGCTAGCGGCCATTGCCTCTCTGACCCTGAATGAAGATGTTCTGGCGCGAGTGGTGCCCAATGGACAAAGCTTTAGTGACAATTATGCAGGAATCTTCCATTTCCAGTTCTGGCAGTTTGGGGAGTGGGTGGATGTCGTCATCGATGACCGGCTGCCGGTGAAAGACGGCGAACTGGTTTTTGTTCACTCCGCCGAGGGAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCGAAGGTTAATGGGTGTTACGAAGCTCTGTCTGGAGGATCCACCAGCGAGGGTTTCGAGGATTTCACCGGAGGCATCGCTGAGAGCTACGAGCTGAGCAAAGCTCCTTCCAACATGTTTCAGATCATCCAGAAAGCCCTGGAGGCTGGTGCTTTGCTGGGCTGCTCCATTGATATCACTAGTGCGGCTGATTCAGAAGCCGTCACCCGTCAGAAGCTGGTGAAAGGCCACGCTTACTCGCTCACCGGGGCGACCGAGGTGAACTATCGTGGCCGCAGGGAGAAACTGGTTCGCATGCGCAACCCTTGGGGGCAGGTGGAGTGGACCGGAGCCTGGAGCGATGGttCATCCGAGTGGAACAACATCTCTTCGGAGCGGCCGAACGCCAGCGCCGAAGATGGAGAATTTTGGATGTCATTCACAGATTTTCTCAGCCAATACTCTCGTATTGAGATCTGCACCCTGACGCCGGATGCCATCACCAGCGATTCGGTTAAACACTGGGCCGTGACCAACCACGACGGCACATGGAGGAAAGGCTCCACCGCTGGAGGCTGCAGAAACAACCCTTACACATTCTGGATGAATCCTCAGTATGTGATTAAGCTGAACGAAGAAGATGATGATCCAGGTGATAACGAGGTAGGCTGCAGTTTCGTGGTGGGTTTGATCCAGAAGAACCGGCGGCGTCTGAGGAAATCTGGAGAGGACATGCACACAATCGGCTTTGCCATTTATGAGTTACCTTCACAGTTTCACGGTCAGCGTGAAGTGCACCTCGATAAGAACTTCTTCCTGACGCACGCTCAGAAAGCTCGCTCAGAGACTTTCATTAATCTAAGAGAGGTCTGCACGCGCTTCAAGCTGCCTCCTGGGGAGTACCTCGTCGTGCCGTCCACCTTCGAAGCCAACAAGGACGGAGACTTTTGCCTGCGCGtcttttctgaaaaacagaccGAAACACTACCGTGTGATGACCCTGTGGATGCTGAATTACCTGATGAGACTGTCTCAGACAGTCAAGTCGATTCTGGATTCAGAGGCATGTTCGTAAAACTCGCCGGAGCTGACATGGAAATCTCAGCCTCAGAGCTCTCGACTATCTTAAACAAAATCATCGCAAAACGAACTGACATAAAGACGGACGGCTTCAGTTTGGAGACCTGTCGTGTCATGGTGAACCTCATGGATGACAGCGGGAATGGAAAACTAGGTTTGGGAGAGTTCGCTACTCTGTGGAAGAAAATTCAGCGATACCTTGGAATTTACAAGAAGAATGACATGGATAATTCAGGAACAATAAGCACTCCAGAGCTGCGTTTGGCGCTGAAAGAAGCCGGTTTCACTCTTAATAACACTATATTCCAGCTACTGGTAGCACGTTACGGTGAGGCGGACATGACTCTCGACTTTGATAACTTTGTGGCCTGCCTCATGCGTCTGGAGATGATGTTCCGCGTATTCAAAAAGCTGGATCCCCATAAAAGTGGCTTCATTGAAATGGACTTTCAGCAGtggctGAACTTCACTATGATTTAGGGGAATCATCTCCAAACTCCAGAGCGAAAAAGGattacatgttttaaattgtatttactttcatttttttcagttgtttattgCACTTTCGACCAGTCTTACTTCCAAAGTGTTGCATGATTTTACTGCGTTTGACATTGGCACACTATTTTCGTTTACAAATGCAAGCATCcttaaacaaggagaatcttaaccactgtataataaaaaaaaagtgcgtgTGAATTGTTATGAACGTTTTCTCtcaaaatgtcataattaaacacttttgacACTGTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224850 lncRNA downstream 10591 11793596 ~ 11794224 (-) False LOC122327290
TU224804 lncRNA downstream 214892 11587661 ~ 11589923 (-) True G151919
TU224780 lncRNA downstream 253945 11550198 ~ 11550870 (-) True G151904
TU224771 lncRNA downstream 274205 11528098 ~ 11530610 (-) True G151896
TU224767 lncRNA downstream 281393 11522030 ~ 11523422 (-) True G151893
TU224862 lncRNA upstream 26010 11841588 ~ 11845142 (-) False LOC122327182
TU224864 lncRNA upstream 26010 11841588 ~ 11845142 (-) True LOC122327182
TU225279 lncRNA upstream 177135 11992713 ~ 11993033 (-) True G152223
XR_006247625.1 lncRNA upstream 177545 11993123 ~ 11997045 (-) True LOC122327268
TU225291 lncRNA upstream 210534 12026112 ~ 12026795 (-) False G152234
XM_043222520.1 mRNA downstream 117 11793573 ~ 11804698 (-) True LOC122327290
XM_043223306.1 mRNA downstream 153993 10467127 ~ 11650822 (-) False LOC122327734
XM_043223305.1 mRNA downstream 153993 10467127 ~ 11650822 (-) False LOC122327734
XM_043223304.1 mRNA downstream 153993 10467127 ~ 11650822 (-) True LOC122327734
XM_043223291.1 mRNA downstream 233137 11567017 ~ 11571678 (-) True LOC122327726
XM_043222365.1 mRNA upstream 26010 11841588 ~ 11844852 (-) False LOC122327182
XM_043223483.1 mRNA upstream 30288 11845866 ~ 11855677 (-) True LOC122327836
XM_043223479.1 mRNA upstream 47217 11862795 ~ 11870285 (-) False LOC122327835
XM_043223478.1 mRNA upstream 47217 11862795 ~ 11870284 (-) True LOC122327835
XM_043223480.1 mRNA upstream 47217 11862795 ~ 11870279 (-) False LOC122327835
unassigned_transcript_2544 other downstream 456364 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 616137 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 616137 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1382480 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1483152 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 229891 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 327264 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 745295 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1090571 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1090669 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile