RNA id: XM_043222545.1


Basic Information

Item Value
RNA id XM_043222545.1
length 5694
RNA type mRNA
GC content 0.52
exon number 30
gene id arhgef18b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5882826 ~ 5922490 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctctctctctctctctctctctctctctctcactgtgaGCCCCCACCACTGTGCCTCTTGACTTTGAATCATATGTTAAATAATCCCCGGTGGTTCCCTCCTCTGATCCGGCTCTGGGACACTAGTTTTCTGATATCTCGTTCACTAACTCCTCTGGGAGAACCTCACACCGTCCACATGGCAGATCCACCTCTGCACAACTCCTGGCCCTCGTTCTCATGGATGAAACGATGGTCCTTCAAAAGAGCCTCAGATTGCAAACCATGCTCTCAACTTCGAGCCCCGGTCTCAGCTCCCAGCTCCTCCTCATCTTTGTCCCCGACCTCCATCCCAGAAGACGTCTTCTTTAGCAGTTCACCCGAGGACAAGAGAAATTTCTTGACTGAGAGCAACGAGTGCAGCAGTGAAGAGGACCTTTTAGACCTTTGCTCTTCTCTGAGAGATTCAGAATATTTCAGAGACCTGCAACTCGGATCCGCTGAACCACCAGACACACAACTTCCTGTTTTATCCATTTCTGCCCCTTCAGTACCTCCCGCATCCACATCGGAAATTGGATCTAGGCAGACTTCCACAGAATTCAACACCCATCAACTTTTCCAGACAGACGACACTGTAATTTCTACAGGAGGGGAAGCCATGGATCGCTTGGTTGCCATCAGAAACTCAGAACCGAAAGACTTCCAGGATTATCCGGAATCCGATCAAGATGAGGACTCGGACACGGACAACTTTCCTATATTGGTTAGATCCATGTCCACTTCACGTAGACACAGTTGGGAAGTGCCAGTGTCACCGATTGACCTGGGAAGAAGGTTCAGTCTAGACACTAATGGCATTGACAGCGATGGGGAAAGAGAGGTCAACTGTTTGGCAAAAAGTCCCATTCTACCATCTTCCTCCTTCTCCGAAAGCTCTGTAGAAGAAACCACCAGCGCAGTGGAAAGTGAAAGTTCCCAAACACCAAAGCCAACCACACCAGCCAAGACGATATATTCCAGATCTGAGATCCTTGCGACTGATGAAAAATCTCAAGCTGACAGAGTCTCCCGCATAGTGGAGACTTCTAAGCAGGCTGCCAGAGAGGCTGGAGAAGAGCAGGAGTCGGAAGAGGAGCTGCAGTCAGTGGAAGGACGGAGTCATGTAGCTAAACGCAGAACTTCAAGTGCAGAACGAAAGGAGGTGGCAGGGAATTTCACATGGTACGAGTTTCTCACCACCGAAAAtgacgaggaagaggaggaaagaCCGGAGCGTCCTGAAAAAGGCACTAAAGTCAAGAGGACTCTGAGCTCACTGAGGAACCGCGTGACCGGATCCTTCAACAAAGACAAAGGTAAGACCCGGGACAAAgagcagcagaaagagaaaagcagagagcgagagaaggacaaagagaaagagaaagagttgCGCGAGCGTGAGAAAGTGCGGCGGCGCAGCGTGAGCGGCCACCAGCTCGTGCCTGGCTCGTTCTCCACCTGGGCCACATGTTCACTGTGCAGCAAGACCCTGCAGAGAAAGCATGGCCTGCAGTGTCTGAACTGCGCCGTCAACGTCCACAAGAGCTGCAAGAACCTGCTGCCCGAGTGCAGCAGCAAAAACAAGATTAAAGACTCGGCTCAGAAGACTTCAAACGCCGCAGCTCAGGCGCACAGTCAAGCTCTGAGGGAGCCCTGCTCTGCCCTGACCCCCGTCGATGGCTCGTCCCGGACGTCTCGCTGTGCTTCAGGTATGACCGTCCCACCCAAAGGACACAACGCCCAACCTGCCTCCTCCAGCAACCCTACCGTCAGCCACAACAACAGCAGCGGCTCTATCACAGGAGAGATGGACGAGGTTGACGCGTTCAGGATGAAGCGGCCCACCGACGACGCCGTATCTCTCGCCTCCACCACGCCTGAGTCTCTCCTCGTCGAAGACGCGTATTACGCCACAGTACGAGGGGAGCTGGAAACCATCGCACAAGATTTCGAGGTGGAGTCCTGGAGTCTGGCTGTGGACCAGCACTTCTTGAAGAAACATTCGAAGGAAATGATCAAGAGACAGGACGTTATATACGAGCTCATCCAGACGGAGATGCACCACGTGCGGACGCTCAAGATCATGCTTCGGGTTTACGCTCGAGACCTGCGGGAGGCGCTACAGCTGGACGACAGGAAGCTGGCCTGTCTGTTTCCCCGGCTAGACAGCCTGCTGGAGCTGCACAGCCACTTCCTGTCCCGCCTCCGAGAACGTCGCGCAGAATTCGTGCAGCCAGGCAGCGATCGCAACTATGCCATCCATAAACTCTCAGATATTCTTATATCCCAGTTTTCCGGAGAGCTTGGAGAGCAAATGAAGGAAAGCTACGGGGATTTCTGCAGTCGGCACACTGAAGCGGTCAACTACTACAAAGAGCAGCTGCAGAGCAACAAGAAGTTCCAGAACCTCATGAGAaaAATCAGCAATCTGCCAATAGTGCGGCGGTTAGGCGTTCCAGAGTGTATCTTGCTGGTGACGCAGCGAATCACCAAGTATCCCGTTCTTCTGGAGCGCATCCTGCACAACACAGAAGCTGAGACGGAGGAGCATGAAGGATTAGCAAAGGCTCTCGGTCTAATCAAAGACGTCATAGTTCAGGTGGACACCCAGGTCAGTCTTTACGAGAAGGAAGTACGGCTCAGGGAGATCGCCTCCAAGGTGGAGCCCAAGTCCCTTGGGAAAATCAAAGATGGCCGCGTTTTCCGGAAGGAGGACCTTTCTCATGGGCGCCGAAAACTCTTGTATGAGAGCATGGTCAACTGGAAAGCAGCATCTGGTCGGCTTAAAGATATTCTAGCTCTCCTTCTCACGGATGTTCTCGTCTTGTTGCAAGAAAAGGACCAGAGATACGTGTTCTCCACTGTGGACAACAAGCCGTCCGTTATTTCACTGCAGAAGTTGATCGTCCGTGAGGTGGCGCACGAGGAACGGGCCATGTTCCTCATCTGTGCCTCCTCAAACGAACCCGAGATGTACGAAATCCACACGGCCTCAAAAGAAGACCGCAACACGTGGATCACCCACATTCGTCAGGCCGGGGAGAGCTGTCCACATATAGAAGAGAGATTGTTTAGCGAGGAAGAGGAAGCCAGAGTCGCCCGTTTCCGAGAGTTTCAAGACCGCCTGACGCTGAAGGATGCTCAGATCGCGCAGGGTCTCACAGAGAAGCTGCAGTTGTTCGCAGAGCTGGCTGAATCCGTGGCGGGTTTAGAGGACGCCGGCTCTCGCTCCCGTCTGCTTCTGCGGGGCGACGCCTCTGACCTCCAGCAGGGGGAGCAGCTGCTCAAAGGAGCCATTACTGAAGTGGAGAACCTGCAGAACCTCCTTTCATCTGGAGCTCGGGAAGCAGCGCCGCAGACCGAGGGGAACCAGAGTCCGTCCTTGAGTTTACTTCCACGCAGAGCAGACACCTTCGGCGGCTATGATAGCATTCCCAGCATACTGCCTAAGAATGGCAGTATTAAGAAGAAGGTTGCTGGGGCGGCCGGCAGGACCAGGGACCGGAGTCAACGGGCCAGCTCTGATCCGCAGCTCAAAGAGGTTTACTCGTGTCAAGACCAGGATGAGCTGGACGAGGCCTCTTCCCCCGGCTCGCACAAAACGTGGTCGGCCTGTAAATTTCCGGAGTCCGAGTTCTACGAGCGAGTGCTGCTGCTGTCCCAGAGGCTGTACAGTTTACAGGCCATAATCTCTCAGCAGGACAGCCACATCGAGCTTCAACGGGCCTCTCTCCTCACCGCCGAGCGGGACCGCCCCGGCAGCCGGAGCCGCGGCACGGACGTGCTCCTGGAGCAGGAGAAGCAGCGTAACCTGGAGAAGCACCGCGAGGAGCTGGCCAACTTCCAGCGGCTACAGAGCCAGCACCGTCAGGAGCAGGCACGCTGGGAACGGGAGCGGGAGAAGCAACGGCGCCAAGCCGAGGCAGCCGAGCAGCGTCTGAAGGAACGGGAGGAGGAGTGCCGGCGGCTGGAGCTGCGCTTGGTCGAGGAGAAGCAGGAGCTCGAGAGGCAAAGACAGACCTACCAGCAAGACCTGGAGAGGCTGAGGGAGTCCACGCGCACCGtcgagaaagagaaagagcgaCTGGATCAACAGAGGAAGTTGAAGAAGCACCACACGGTGCCAAATACGGCAGCGCTGTACGCACAGGAAGTTGGACAGCTTTCCAGTTCCTCCAGCTTCAACGGAGAGCTGCTGCTCGGCGGAGCAGGGGACCAGACGTTTCCTCAAAAGTCGCACCTTCGGGCCTCTCTCTCCGTGTCCCCCGCCGACTACTCGGAGCGCCCCGAAGTTCACTCGCGCCGCGAGAGCTCCTGCGGCGCCCTAACGGCCAAGACAGAGGTTCCCATACATCTCATCAGCACCACAAACCAGCTGCACAAGCAGGGCAGTGTCCAGCAGCAAATACCCACCAAACTGGCCGCCCTCAGCAAGGGCAAAGAGAAGAGTGGGAAGGGCAAGAGTTCACACCGCGCCGATAGTTTGGCTTCTGCTGACATCAAGCAGATGCTGCCCATCAAGCTGTCATCGAGGGATTCGGACGGAGGTCACAAAGCGCGCCGGCCCATCAGCCCCCACCAACCTCAACATTCGCACTCAGATTCCCTCAGCCCTCCAGACGCTCAGGCGGACGCCCCGTCTAGCCTCGCGCCCGCCGTTCTCAAAACCCACAACCAGGCCTCCCAGCCCACCCTTTCGTATACTGTTAGCGACGAAGCCGCCAAGGAAGACGTTATCTACTTCTGAGGCGTCTGATGGGATGGGGAGACTTATTTTACTTAAGGAATAGATTTTAGTCCTCCTAGTCTTAACAACTAACAAGTACGGCAAAGAAACATGTGTTTTAGTTAAAACCTAAAAAGGCTCAGAGTCTGTCCAGAAAACCCAAAGACTTCAGGTGAAGGACGCTTCTGTAGCGCGAACAAAATGAAGGacggatgttttttttaagttgcttaTTTTTGTGGTGAGCAGTTTTGCACAGCGGCGACGTCCCGTTGCATTTCAGACTCGGTATTTGGGACAACTGTTTTCTGTCGGATTTGCTTTCGGGGTCAACTTTGTTGCGTATGGAAAACGGCATACGTCGAGATTTTGATACTGAAGTCAGTTTTGACTTCAGCACACTGTGTAAGCTTTGCTGGATTTCAACTTggattatttgattttataaaagCCAACTCCATTTCAGTGGTCATTTTATTCACGCGCTACATCTTCTTAGAGATTTCTTCCagtgtgcacaaaaaaaaaaaaaaaaaaaatttaagcagCGGACATGCAGAGAATCAAGGATTATATTAaccattattttgtttttaatttatgtgttAGTTGATCTTACAAATCTGAGCATTTTGAGATTACTCAAATAGAAATCAGATGAAGGATACAAATGTCTTAAATGGAAAATGAAGTGAAGTCAATTTAAGACATGACTTggcaaaaatatgaatgattgaAACTATTAAAGAACGTACATGTCTGTATTTACCCAGAAGCCCCCAccccttaaaaaaacaaatctacaaTTCTGGCATAGTGTTGTCATTTCAATgtcattttctcagtttaaaacacatttcttttagtgtttttaatttatttttaataaaatgaatagaaatagcTCTGTCTGAACCATTTGTTTCTGTACAGTAATGAtaat

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222349 lncRNA downstream 27659 5854785 ~ 5855167 (-) True G150234
TU222348 lncRNA downstream 28423 5854201 ~ 5854403 (-) True G150233
TU222347 lncRNA downstream 30936 5851285 ~ 5851890 (-) True G150232
TU222203 lncRNA downstream 58913 5822929 ~ 5823913 (-) True G150152
TU222313 lncRNA downstream 118871 5758324 ~ 5763955 (-) False LOC122327537
TU222402 lncRNA upstream 224723 6144878 ~ 6155016 (-) True G150271
TU222404 lncRNA upstream 237342 6157497 ~ 6183901 (-) True G150273
XR_006247652.1 lncRNA upstream 393020 6313175 ~ 6314227 (-) True LOC122327580
TU222325 lncRNA upstream 423984 6344139 ~ 6345150 (-) True G150216
TU222482 lncRNA upstream 457532 6377687 ~ 6381972 (-) True G150322
XM_043223026.1 mRNA downstream 21494 5859347 ~ 5861332 (-) True timm13
XM_043222613.1 mRNA downstream 35896 5839748 ~ 5846930 (-) True sass6
XM_043222977.1 mRNA downstream 89772 5789815 ~ 5793054 (-) True LOC122327539
XM_043222595.1 mRNA downstream 110753 5764038 ~ 5772073 (-) False bap1
XM_043222557.1 mRNA upstream 7361 5927516 ~ 5984443 (-) True insrb
XM_043223031.1 mRNA upstream 69342 5989497 ~ 5992758 (-) False use1
XM_043222769.1 mRNA upstream 91280 6011435 ~ 6016809 (-) True atp6ap2
XM_043223879.1 mRNA upstream 175955 6096110 ~ 6097823 (-) True LOC122328173
XM_043223018.1 mRNA upstream 265814 6185969 ~ 6187727 (-) True mid1ip1b
TU222175 other downstream 21509 5859347 ~ 5861317 (-) False timm13
XR_006247631.1 other downstream 230668 5644413 ~ 5652158 (-) False nisch
XR_006247648.1 other downstream 340746 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other downstream 340767 5538561 ~ 5542059 (-) False bloc1s1
XR_006247634.1 other downstream 350017 5527557 ~ 5532809 (-) False gls2b
TU222356 other upstream 69345 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 316097 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 362301 6282456 ~ 6285577 (-) True gcga
TU222663 other upstream 697420 6617575 ~ 6659352 (-) True G150440
TU222738 other upstream 934615 6854770 ~ 6856863 (-) False nab1a

Expression Profile