RNA id: XM_043222558.1


Basic Information

Item Value
RNA id XM_043222558.1
length 3791
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC122327304
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5355545 ~ 5373808 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTCATCAACGAGAAACCTTTCGACACGCCCATTTATCCGGTGTGCGGTAGCTGCCTCTGAAACAAGAGGAAAAGTAGTCACCGCTAGCGCTATCACACAGCCCTGAGTCTACTGAGaTTCCCCTCCAAACACACAGGAATTCACCTACAGTTCAGCTcctaccacaacaactgaagTAATAAAGCCAAAAGCATGACTGATTCAGAAGCCTGCAGAATAAAACAGGAAGACGCTGAACAACAAATAGCCTCTATGCAAAGGAATAGTTGGACATCATGGAGGATTCTGCCCCTACAGCCAAAGGAGCACTTTACTCAAGacCTGATAGAAGAGAACAAGGAGATTGAAGAACTGATTGGAGATGGAGAGAACCGTCatgtgaaaactgaagaaacatCCTGGATTTCCTCATTTAAAGGAGACAAAACATGGCTTCAATATGAAAAGAGCGTCTCATGCACAGAAAATCTtgatattcatataaaatgtcATCTTGAAGGGAAGCCATACACATGTAATCAGTGTGAAAAGACTTTTACAATAAAAGGAAACCTTACAAAACATATGAatatccacactggagagaagccatACACATGTGGTCAGTGTGGAAGGAGCTTCAGACTAAAAGCAACTCTTAATCAGCACATGAATATTCATGCTGGGAAGAAGCTGTACAAATGTGGTCAATGTGGAAGGCGCTTCAGGCTACAAGCAACTCTTAATCAACACATGAATATCCACACAGGAGAGAAGCCCTACTCATGTACTCAGTGTGAAAAGACTTTCACAATAAAAGGAAACCTGACAAAACATATGAATATCCACACTGGGAAGAAACCATACACATGTGTTCAATGTGGAAGGAGCTTCAGACTAAAAGCAACtcttaataaacacattaatatcCACACAGGAGAGAAGCCCTACATGTGTGATCAGTGTGGGAAAAGCTTCAGACTAAAAACGACCCTTAATGAACACAGGCAGATCCACACAGGAGAAAAGCCATACACATGTGGTCAATGTGGGAAAAGCTTCAGACTAAAAGCAATGCTTAAAAAGCACATGGATATTCATGCTGGGAAGAAGCCATACACATGTGGTCAATGTGGAAGGAGCTTCAGACTAAAAGCAACCCTTAAAAAGCACATGGATATTCATGCTGGAAAGAAGCCATACACATGTGTTCAATGTGGAAGGAGCTTCAGACTAAAAGCAACtcttaataaacacattaatatcCACACAGGAGAGAAGCCCTACATGTGtgatcagtgtgggaagagCTTCAGACTAAAAGCTACCCTTAATGAACACACAAGaatccacactggagaaaagCCATACAcatgtgatcagtgcgggaagagtttcacaCAAAAAGGATACCTTGATGCACACTTAAAAacccacactggagagaaaccatatacctgtgatcagtgtgggaagagtttcacacAAAGAGGAGCCCTTAAAGTACACATGAggattcacactggagagaagccacACACATGTAATCAGTGTGGGACGAGTTTCAGACTTAAGCAAACCCTTGATGAGCACTTtaggatccacactggagagaagccatACACCTGTAATCAGTGTGGAAAATGTTTTAGAAGATATAgtggttttaaaaaacatctgCTTACTCATTCTAGAGAAAGACTAGCTGAACGTGACCAAAgcagtaaaacattatttaggTCAAATTTCCAGAAGAACCACCTGAAAGTTAATACAAATGAGAAGTCTTACGTATGCTATTtatgtggaaagagttttagtAAGATGGTTGCACTAAAGATACACCAGAAAAGACACAGCGGTGTGAAGGATCATATTTGCTCTGTTTGTGGGAAGACCTTCGTTACATATGGTGCACTGAAAGTGCACCAGACAGTTCACACTACAGAAACACCttacaagtgttcacactgtgacaagagaTTCAAACGATCAACATATCTGCAAATACATGAGAgaatccacactggagagaagccacATAAATGTGATCAATGTGGGAAGAGCTTTAGACTAAAAGAAACTCTTAATCAACACATGAATATTCACACTGGAGAAAAGCCGCACACATGCGATCACTGTGGGAAGAAGTTTGGACAGAAAGGAAACCTTAACAAACACATGAgaatccacactggagagaggATACACACATGCgatcagtgtgggaagagtttcctAGAAAAAGCAAACCTTAAAGAACACATGAAtattcacactggagagaggCCATACTCATGTGATCAGTGTGGCAGGAGTTTCGCACATAAAGGAAACCTCATCAAACACATGAAATGCCACACAGGGGAAAAGCCACATGCATGtgatcagtgtgggaagagGTTTGCAGAAAAGGCAACCCTTAATGAACATATaaggatccacactggagagaagccgtaCACTTGTGATCTGTGTGGGAGGAGTTTCACACAAAGAGGAACCCTTTATGAACACATGAAAACCCACAGTGAAGTAAAGCCATATACCTGTAATCAGTGTGAGAAGAGTTTCAAACGAAAAGAAGGTCTTAATGATCACATGAaaatccacactggagagaagccgtaCACATGTGATCAGTGTGGGAGGAGTTTCACACAAAGAGGAACATTTTATCAACACAAGAAAACCCATACTGGAGTGAAATTATTTCGTAAAAATAGTTTCAGGACCGATTTACTGAAGAGCCACTTAAAGGTTCATACAAAAGAGAGGCCTTATGTATGTGATTtatgtggaaagagttttagtCAGAtggttgcatttaaaatacaccaGAAGAGACACAACGGCATTAAGGATCATGTTTGCTCTCAGTGTGGCAAGACTTTTTTTACAGATACTGACCTGAAAATGCACAGGACAGTTCACACTACAGAAACACCCtacaagtgttcacactgtggCAAGAGCTTTAAACggttaatatatttgaaaatacatgagaacatccacactggagagaagcctcatgcttgtgatcagtgtgggaagagCTTCAGACTAAAAGGAACCCTTAATGATCACATGAAaatccacactggagaaaagccacacacatgtgatcagtgtgggaagtgtttcacacaaaaaggaaaccttaacaaacacattaaaatccacactggagagaagcctcaTGCATGTGATCATTGTGGGAAACGCTTCAGACAAAAAGGAAACCTTAATGATCATGTGAAaatccacactggagaaaagCCACACACATGTGATCAGTGTGGGAAGACTTTCagaaaattaagtgtttttaaagttcaTCTGCATACTCATTCTAGAGAAAGACCAGAGCATGCTCGCTCTGAGTGTGGGGTGACTTTTCTTACTGATAGTGAAGTGAAACAGCACCAGACAGTTCACACTACAGAAACGCCttacaagtgttcacactgtgacaagagaTTCAAACGGTCAATACATCTACAGATACATGAgaggatccacactggagaaaagCCTTATCAATGCCATTCATGTGGGATAAGATTCACTCAATTATCTTCTCTAATATGTCATAAACTGCATGTCTGCGTATCTGAAATTACAGTAAGTAGTTCAATTTAGTTAAGTTAGTTAGGGCTGCAGCAagtaattattttgataaatgattaatcagagtttattaaaatgatttagcaacttttttttttcacagattaATCAGtagctttagattttttttttggcttttggattttattaaaatgttgagtTAAACCTATtctaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247691.1 lncRNA downstream 54746 5308250 ~ 5309890 (-) True LOC122327610
TU222076 lncRNA downstream 61398 5302860 ~ 5303238 (-) True G150071
TU222064 lncRNA downstream 87894 5273557 ~ 5276742 (-) True G150060
TU222031 lncRNA downstream 129176 5232171 ~ 5235460 (-) True G150033
TU222016 lncRNA downstream 137762 5218835 ~ 5226874 (-) True G150025
TU222098 lncRNA upstream 45732 5418456 ~ 5425539 (-) False G150086
TU222105 lncRNA upstream 45732 5418456 ~ 5470508 (-) False G150086
TU222099 lncRNA upstream 55473 5428197 ~ 5428769 (-) False G150086
TU222101 lncRNA upstream 68819 5441543 ~ 5447476 (-) True G150086
TU222100 lncRNA upstream 69624 5442348 ~ 5447476 (-) False G150086
XM_043222566.1 mRNA downstream 1445 5360068 ~ 5363191 (-) False LOC122327304
XM_043222565.1 mRNA downstream 1457 5360068 ~ 5363179 (-) False LOC122327304
XM_043222563.1 mRNA downstream 2918 5355545 ~ 5361718 (-) False LOC122327304
XM_043222562.1 mRNA downstream 2918 5355545 ~ 5361718 (-) True LOC122327304
XM_043222564.1 mRNA downstream 4576 5355545 ~ 5360060 (-) False LOC122327304
XM_043222696.1 mRNA upstream 728 5373452 ~ 5378887 (-) True LOC122327375
XM_043222709.1 mRNA upstream 58131 5430855 ~ 5434143 (-) True LOC122327381
XM_043223875.1 mRNA upstream 99212 5471936 ~ 5480859 (-) True LOC122328170
XM_043223877.1 mRNA upstream 108984 5481708 ~ 5490754 (-) True LOC122328171
XM_043222606.1 mRNA upstream 119366 5492090 ~ 5496079 (-) True LOC122327326
XR_006247637.1 other downstream 210780 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 627776 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 776214 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 878293 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 931136 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 154833 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 165832 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 165837 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 271689 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 486623 5859347 ~ 5861317 (-) False timm13

Expression Profile