RNA id: XM_043222573.1


Basic Information

Item Value
RNA id XM_043222573.1
length 3582
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122327308
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5336724 ~ 5351569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACATCTACAGATACATGAGAAGATCCACCCTGGAGAGAAGCTGCATCACTGCCATTcatgtgggaagagtttcactCAATTATCTTCTCTAATCTCTCATAAATTACACGTCTGCATGTCTAGAATTACAATCTTTATGAAAGAAGACCGAAAACATGACTGCTCCAGAACCATGTGGAATAAAACAGGAAGATACTGAACAACAAATAGaCCTGGTAGAGAACAGGGAGAGTGAAGAGGGGGAGAACCATCATGTCAAAACTGAAGAAACCTCCTGGAAACATCCTTCATTCAAGCAAAATTTGGATATTAACACGAAAAGTCATCTTGAAGGGAAGCAATATGCTTGTGATCCGTGTGAAAAGACTTTCCCAATAAAACGTAACCTTACGAAACACATAAAtttccacactggagagaagccacATGCTTGTGAACATTGTGGGAGGAGATTCAGGCGAAAAGAATACCTTAATGCACACCTAAaaatccacactggagagaagccgtaCACATGTGGTCAGTGTAAGAAGAGTTTCAGACAAAAATCTGCCCTTAATGTacacatgaggatccacactggagaaaaaccaTACACATGTGAAcaatgtggaaagagtttcagacTCAAGCAACCCCTTAACAAtcacatgaggatccacactggagagaagttATATACATGTGATCAGTGTAGGAAGAGTTTCAGACTTAAGCAAAGTCTTGACAGGCACATTATGATCCATACAGGAGAGAAGCCGCACACATGTgttcagtgtggaaagagtttcacacgaaaagaaaactttaatgCACATCTTAAAACCCACAGTGGAGAGAAGTTGTACACATGTAATCATTGTGGAAGGAATTTCAGTAAATACTATAGTTTTAAATTACATCTGCTTGTTCATTCTAGTGAAGGACTAAAGAACTGTAACCAAAGCAGTAGAGAATTTTTTAGGGCAGGTTTCCTGAAGGACCACCTGAAAGTTACAACAGACAAACCTCATGTATGTTATTtatgtggaaagagttttagtCAGATGGTTGCACTAAAGATACACCAGAAAAGACACAGTGGTGTAAAGGATCATTCTTGTTCTGAGTGTGATAAGAcattttttacagatgctgaACTAAAAGTGCACCAGACAGTTCACTCTACAGAAACGCCttacaagtgttcacactgtgacaagagaTTCAAACGGTCAGGATATCTGCAAATACATGAGcggatccacactggagagaagccgtaTACATGTGATCAGTGTGGGACAAGCTTCAGACTAAAAGAACTGCTTAATGAACACATGTacatccacactggagagaaacctcCCACATGTGAACACTGTGGGAAGAACTTTAAGCAAAAAGCACACCTTGATAGACACATGAGactccacactggagagaatcTACACACATGTGATCAGTGTGGGAAGGGTTTCTTAGAGAAAGGAAACCTTAAAGACCACATGAatatccacaccggagagaggcCGTACTCATGTGATGAATGTGGGAAGAGTTAcaaaaataatggaaaccttttagTGCACAAGAAAAGCCACACTGGGAAGAAGCCACACACATGTGctcagtgtgggaagagttttgCAGAAAAGGCAATCCTTAATGAacacatgaggatccacactggagagaggCCATACACGTGtgatcagtgtgggaagagtttcaccCAAAGAGGAGCTCTTATTACACACAAGAGAACCCACAGTGAAGAGAAACCATATATCTGtgatcagtgtgggaagagttttaAGCAAAAAGAAAGTCTTTGTGATCACATGAaaatccacactggagagaaaccataCACATGCgatcagtgtgggaagagttttgTACGAAGAGTAAGCTTTTATCTACACAAGAGAACccacactggagaaaaaccaTACTCCTGtgatcagtgtgggaagagtttcaggCAAAAAAGAAGCCTTCACGATCACATGACAATCCATACTGGAGAGAAACCTAATACCTGTGATCAGTGTGGGAAAAGTTTCAAACGAAAAGAAAAACTTCATGAtcacatgaggatccacactggagaaaaaccaTACGTATGTGATCAGTGTGGGGAGAGCTTCAGACTAAAAGAAATTCTTAATCGacacatgaggatccacactggagagaggCCTTACGCATGTACACAATGTCATAGGAGTTTCAGACTAAAAGAAATTCTTAATCGACATATgaggatccacactggagagaggCCGTACACGTGtgatcagtgtgggaagagtttcaccCAAAGAGGAGCTCTTATTACACACAAGAAAACCCACAGTGAAGAGAAACCGTATATCTGtgatcagtgtgggaagagttttaAGCAAAAAGAAAGTCTTTGTGATCACATTAatatccacactggagagaaaccatacacatgtgatcagtgcgggaTGAGATTTGTACGAAGAGTAAGCTTTTATCAACACAAGAAAacccacactggagagaaaccatattcctgtgatcagtgtgggaagagtttcagaagaaaaagaaacctTCATGATCACAAGACagtccacactggagagaaaccatatacctgtgatcagtgtgggaagactttcagaagaaaaagaaatcttcATGTTCACATGAcaatccacaccggagagaaaccatATTCCTGTGATCAGTGTGGGGAGAGTTTCAGACAAAAAAGAAGCCTTCATGATCACATGAcaatccacactggagagaaaccataTACGTGTGATCAGTGTGGGAGGAGTTTCAAACGGAAAGCTAAACTTCATGAtcacatgaggatccacaccggagagaaaccatACACATGTGAACAATGTGGGAGGAGTTTCAGACTAAAAGAAATGCTTAATCGACACATGATTATCCACACCAGAGAGACGCCTTACTCGTGTGATCaatgtgggaagagtttcaagAATTTAAGTTTTCTTAAAGTACATCTGCATACTCATTCTAGAGAAAGACCGTCTAATTCTAACCAGCGCAGTAGAAAAAAACTTAGGGAATGTTTAAATTATCACCAGAAAAGACACAGCGGTGTGAAGGATCATGCTTGCGCTCAGTGTGGGAAGACTTTTTTTACGTATGGTGCAATGAAAGTGCACCAAATAGTTCACTCTACAGAAAGGCCttacaagtgttcacactgtgacCAGAGATTCAAACGATCAACACATCTACAGATACATGAGAGGATCCACCCTGGAGAGAAGCTCCATCACTGCCATTcatgtgggaagagtttcactCAGTTATCTTCTCTAATCTCTCATAAATTACATGTCTGCGTGTCTAAAATTACAGTAAGTAGTTCAAGTTCTGATCCTGTTCTTCCAGGTGCGAGATAGGGCTGCATCAAGTTATCATTCTGATAATCGAATAATTAGaaattattagaatgattaatCAATCAATTGTTGATTATTTAGCAGATTATTCCGTatctttattgatttatttggattttggagatgaaaatattgttatacccattctaattaataaataaaacgatgaAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247691.1 lncRNA downstream 34347 5308250 ~ 5309890 (-) True LOC122327610
TU222076 lncRNA downstream 40999 5302860 ~ 5303238 (-) True G150071
TU222064 lncRNA downstream 67495 5273557 ~ 5276742 (-) True G150060
TU222031 lncRNA downstream 108777 5232171 ~ 5235460 (-) True G150033
TU222016 lncRNA downstream 117363 5218835 ~ 5226874 (-) True G150025
TU222098 lncRNA upstream 66887 5418456 ~ 5425539 (-) False G150086
TU222105 lncRNA upstream 66887 5418456 ~ 5470508 (-) False G150086
TU222099 lncRNA upstream 76628 5428197 ~ 5428769 (-) False G150086
TU222101 lncRNA upstream 89974 5441543 ~ 5447476 (-) True G150086
TU222100 lncRNA upstream 90779 5442348 ~ 5447476 (-) False G150086
XM_043222575.1 mRNA downstream 2284 5336724 ~ 5341953 (-) False LOC122327308
XM_043222587.1 mRNA downstream 2303 5327286 ~ 5341934 (-) False LOC122327315
XM_043222585.1 mRNA downstream 2303 5327286 ~ 5341934 (-) False LOC122327315
XM_043222586.1 mRNA downstream 2303 5327286 ~ 5341934 (-) True LOC122327315
XM_043222909.1 mRNA downstream 63314 5279478 ~ 5280923 (-) True LOC122327497
XM_043222567.1 mRNA upstream 3976 5355545 ~ 5372724 (-) False LOC122327304
XM_043222563.1 mRNA upstream 3976 5355545 ~ 5361718 (-) False LOC122327304
XM_043222562.1 mRNA upstream 3976 5355545 ~ 5361718 (-) True LOC122327304
XM_043222564.1 mRNA upstream 3976 5355545 ~ 5360060 (-) False LOC122327304
XM_043222566.1 mRNA upstream 8499 5360068 ~ 5363191 (-) False LOC122327304
XR_006247637.1 other downstream 190381 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 607377 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 755815 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 857894 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 910737 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 175988 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 186987 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 186992 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 292844 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 507778 5859347 ~ 5861317 (-) False timm13

Expression Profile