RNA id: XM_043222576.1


Basic Information

Item Value
RNA id XM_043222576.1
length 4322
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122327308
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5336724 ~ 5351569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTGGCGGTAAAGCACTAATAAGTATGCCGTCCGCcgtagaagaagaagaagaagaaaactaGAAGGAAAAGTACACACCACTAGGCTAGCCCCATAACACTGAGATCTTTATGAAAGAAGACCGAAAACATGACTGCTCCAGAACCATGTGGAATAAAACAGGAAGATACTGAACAACAAATAGaCCTGGTAGAGAACAGGGAGAGTGAAGAGGGGGAGAACCATCATGTCAAAACTGAAGAAACCTCCTGGAAACATCCTTCATTCAAGCAAAATTTGGATATTAACACGAAAAGTCATCTTGAAGGGAAGCAATATGCTTGTGATCCGTGTGAAAAGACTTTCCCAATAAAACGTAACCTTACGAAACACATAAAtttccacactggagagaagccacATGCTTGTGAACATTGTGGGAGGAGATTCAGGCGAAAAGAATACCTTAATGCACACCTAAaaatccacactggagagaagccgtaCACATGTGGTCAGTGTAAGAAGAGTTTCAGACAAAAATCTGCCCTTAATGTacacatgaggatccacactggagaaaaaccaTACACATGTGAAcaatgtggaaagagtttcagacTCAAGCAACCCCTTAACAAtcacatgaggatccacactggagagaagttATATACATGTGATCAGTGTAGGAAGAGTTTCAGACTTAAGCAAAGTCTTGACAGGCACATTATGATCCATACAGGAGAGAAGCCGCACACATGTgttcagtgtggaaagagtttcacacgaaaagaaaactttaatgCACATCTTAAAACCCACAGTGGAGAGAAGTTGTACACATGTAATCATTGTGGAAGGAATTTCAGTAAATACTATAGTTTTAAATTACATCTGCTTGTTCATTCTAGTGAAGGACTAAAGAACTGTAACCAAAGCAGTAGAGAATTTTTTAGGGCAGGTTTCCTGAAGGACCACCTGAAAGTTACAACAGACAAACCTCATGTATGTTATTtatgtggaaagagttttagtCAGATGGTTGCACTAAAGATACACCAGAAAAGACACAGTGGTGTAAAGGATCATTCTTGTTCTGAGTGTGATAAGAcattttttacagatgctgaACTAAAAGTGCACCAGACAGTTCACTCTACAGAAACGCCttacaagtgttcacactgtgacaagagaTTCAAACGGTCAGGATATCTGCAAATACATGAGcggatccacactggagagaagccgtaTACATGTGATCAGTGTGGGACAAGCTTCAGACTAAAAGAACTGCTTAATGAACACATGTacatccacactggagagaaacctcCCACATGTGAACACTGTGGGAAGAACTTTAAGCAAAAAGCACACCTTGATAGACACATGAGactccacactggagagaatcTACACACATGTGATCAGTGTGGGAAGGGTTTCTTAGAGAAAGGAAACCTTAAAGACCACATGAatatccacaccggagagaggcCGTACTCATGTGATGAATGTGGGAAGAGTTAcaaaaataatggaaaccttttagTGCACAAGAAAAGCCACACTGGGAAGAAGCCACACACATGTGctcagtgtgggaagagttttgCAGAAAAGGCAATCCTTAATGAacacatgaggatccacactggagagaggCCATACACGTGtgatcagtgtgggaagagtttcaccCAAAGAGGAGCTCTTATTACACACAAGAGAACCCACAGTGAAGAGAAACCATATATCTGtgatcagtgtgggaagagttttaAGCAAAAAGAAAGTCTTTGTGATCACATGAaaatccacactggagagaaaccataCACATGCgatcagtgtgggaagagttttgTACGAAGAGTAAGCTTTTATCTACACAAGAGAACccacactggagaaaaaccaTACTCCTGtgatcagtgtgggaagagtttcaggCAAAAAAGAAGCCTTCACGATCACATGACAATCCATACTGGAGAGAAACCTAATACCTGTGATCAGTGTGGGAAAAGTTTCAAACGAAAAGAAAAACTTCATGAtcacatgaggatccacactggagaaaaaccaTACGTATGTGATCAGTGTGGGGAGAGCTTCAGACTAAAAGAAATTCTTAATCGacacatgaggatccacactggagagaggCCTTACGCATGTACACAATGTCATAGGAGTTTCAGACTAAAAGAAATTCTTAATCGACATATgaggatccacactggagagaggCCGTACACGTGtgatcagtgtgggaagagtttcaccCAAAGAGGAGCTCTTATTACACACAAGAAAACCCACAGTGAAGAGAAACCGTATATCTGtgatcagtgtgggaagagttttaAGCAAAAAGAAAGTCTTTGTGATCACATTAatatccacactggagagaaaccatacacatgtgatcagtgcgggaTGAGATTTGTACGAAGAGTAAGCTTTTATCAACACAAGAAAacccacactggagagaaaccatattcctgtgatcagtgtgggaagagtttcagaagaaaaagaaacctTCATGATCACAAGACagtccacactggagagaaaccatatacctgtgatcagtgtgggaagactttcagaagaaaaagaaatcttcATGTTCACATGAcaatccacaccggagagaaaccatATTCCTGTGATCAGTGTGGGGAGAGTTTCAGACAAAAAAGAAGCCTTCATGATCACATGAcaatccacactggagagaaaccataTACGTGTGATCAGTGTGGGAGGAGTTTCAAACGGAAAGCTAAACTTCATGAtcacatgaggatccacaccggagagaaaccatACACATGTGAACAATGTGGGAGGAGTTTCAGACTAAAAGAAATGCTTAATCGACACATGATTATCCACACCAGAGAGACGCCTTACTCGTGTGATCaatgtgggaagagtttcaagAATTTAAGAAACCTTACAAAACACATGAATATCCACACTGGAAAGAAGCCATGCACATGTGATCaatgtgggaagagtttcataCATAAAGGGGCACTTAATAGACACATGATGATCCataccggagagaagccttacacaTGCAATCAGTGTGGGAAGAATTTCAGACTTCAGCAATCTCTTAAAGAGCACATGAGGAtacacactggagagaagccgtaCACATGTGAACaatgtgggaagagtttcagaCTTCAGCAACCTCTTAACGAacacatgaggatccacaccggagagaagccgtacaCATGTGGTCAGTGCAGAAAGAGCTTCCGAAAAAAAGTGAGTCTTAAAACTCACATTAAtctccacactggagagaagcaaTACACATGCGGCCAATGTGGAAAGAGCTTCAGACAAAAAACTACTCTTAACAAACATACCAGGATCCACACTGAAGAGAAGCCTTACACATGTGaccagtgcgggaagagtttcagaCGAAAAGAAGACCGTGATATGCACTTAAAAacccacactggagagaaaccataCACATGCGATCAATGTGGGAAGAGCTTCACAAGAAAAGGAGCCCTTAACATACACATGTGCATCCACACCGGGGATAAGCCACACACATGTGATCAATGTGGGAAGAGCTTCAGACGAAAAGAAAACCGTGATGAACACTTAAAAaaccacactggagagaaaccataCACATGTGATCAGTGTGGGAAAAGTTTCACAAAAAAAGGAGCCCTTAACGTACACATGtggatccacactggagagaagccatACACATGCGGTCAGTGTTCGAAGAGCTTCAGACTGCAATCTAccctaaaaaaacacacaaggatccacactggagagaagccgtaCAAATGTGAACACTGTGAAAAGAGTTTCACACAAAAAGGAGCCCTTAACATACACGTGtggatccacactggagagaagccatACACATGCGATCAGTGTTGGAAAAGCTTCAGACTAAAATCTACCCTTAAAAAACACATAAGGATCCACACTTGAGAAGCTGTACACTGTGATCACCTTGGAATCAGAAAGACTAGAAAATCGTGACCAAAGCAGTAGAAAATCTTTTAGGGCAAATTTTCTGGAGGACCACCTGAAACTGTACATATGTTATTAATGTGGAAAGTGTTTTAGTCAGTTGGTTGTATTAAAGAGACACAGCGGCGTAAAGGATGCTTGAGTGTGGGTAGACATCAGATTTATCAGTATTCTTATTGATTGTGTCGGTTTTGGAGTTGCAAATTAAGTGATTTCCTTCAATGAAATCCTTCAAAGTTTTGTGACAGTGCCTTTCTAATAAACTTTGAGTAAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247691.1 lncRNA downstream 26834 5308250 ~ 5309890 (-) True LOC122327610
TU222076 lncRNA downstream 33486 5302860 ~ 5303238 (-) True G150071
TU222064 lncRNA downstream 59982 5273557 ~ 5276742 (-) True G150060
TU222031 lncRNA downstream 101264 5232171 ~ 5235460 (-) True G150033
TU222016 lncRNA downstream 109850 5218835 ~ 5226874 (-) True G150025
TU222098 lncRNA upstream 67990 5418456 ~ 5425539 (-) False G150086
TU222105 lncRNA upstream 67990 5418456 ~ 5470508 (-) False G150086
TU222099 lncRNA upstream 77731 5428197 ~ 5428769 (-) False G150086
TU222101 lncRNA upstream 91077 5441543 ~ 5447476 (-) True G150086
TU222100 lncRNA upstream 91882 5442348 ~ 5447476 (-) False G150086
XM_043222909.1 mRNA downstream 55801 5279478 ~ 5280923 (-) True LOC122327497
XM_043222918.1 mRNA downstream 152438 5182941 ~ 5184286 (-) False LOC122327503
XM_043222917.1 mRNA downstream 152438 5182941 ~ 5184286 (-) False LOC122327503
XM_043222916.1 mRNA downstream 152438 5182941 ~ 5184286 (-) True LOC122327503
XM_043222659.1 mRNA downstream 182868 5147883 ~ 5153856 (-) False LOC122327354
XM_043222593.1 mRNA upstream 749 5351215 ~ 5355113 (-) True LOC122327319
XM_043222567.1 mRNA upstream 5079 5355545 ~ 5372724 (-) False LOC122327304
XM_043222563.1 mRNA upstream 5079 5355545 ~ 5361718 (-) False LOC122327304
XM_043222562.1 mRNA upstream 5079 5355545 ~ 5361718 (-) True LOC122327304
XM_043222564.1 mRNA upstream 5079 5355545 ~ 5360060 (-) False LOC122327304
XR_006247637.1 other downstream 182868 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 599864 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 748302 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 850381 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 903224 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 177091 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 188090 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 188095 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 293947 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 508881 5859347 ~ 5861317 (-) False timm13

Expression Profile