RNA id: XM_043222579.1


Basic Information

Item Value
RNA id XM_043222579.1
length 3153
RNA type mRNA
GC content 0.59
exon number 19
gene id LOC122327311
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2977651 ~ 2988298 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCGCAGATCACGTGCCGGAGGAAGTCGTCACGGTCGAGTTTCCCATCGCCTCGTCTTGAACTGAAACACAACAAACCTGTTCAAATGTAACGGTCGCACCCGTTTAATGGAGTTATTTTGTGTCGCTTCTCGGCGTCATGGGATATGAATGAATCCGTGGTCTAATAATAGCGAGTAATCCTGAGAAAAATGGATATTTCCACGCCACCAGAAGATCAAGAGCTGCGTAATGTCATTGACAAACTGGCTCAGTTTGTCGCCCGAAATGGACCCGAGTTTGAGAAGATGACTATGGAGAAGCAGAAGGACAACCCCAAGTTCTCCTTTCTGTTCGGAGGGGAATATTTCGGCTACTACAAATACAAACTGGCCATCGAACAGCAGCAGCATTCTGGCACTCATGATGATGAATATAAAATGGAAGCAGCGCTCTGTAAACCCCTGGGGAAAGAGGTGGCCGAGGTTCCTGCGCCGATGTCGATGCTCCCGCCGCCGCCGATCCCTCCGAGCACGCCGTCTGTGGAGGAGCTGATCCAGCAGAGCCAGTGGAACCTGCAGCAGCAGGAGCAGCACCTGCTCAGCCTCAGACAGGAGCAGGTGACGGCCGCCATCTCTCTGGCGATGGAGCAGCAGATGCAGAAGCTGCTGGTGGAGACGCAGCTGGACACCAACGAGTTCGACAACCTGCTGCAGCCCATCATCGACACCTGCACCAAAGACGCCATCTCGGCTGGGAAGAACTGGATGTTCAGTAACGCTAAGGCCCCGCCGCACTGTGAGCTGATGGCGTCGCATCTCAGGAACCGCATCACGGCGGACGGGGCGCACTTCGAGCTCCGCCTGCATCTCATCTATCTGACCAATGACGTGCTGCATCACTGCCAGAGGAAAAATCAGAGGGATCTTTTGGCGGCTCTTCAGAAGGTCGTGGTTCCCATTTACTGCACCAGTTTCCTGGCTGTAGAGGAAGACAAGCAGCAGAAAATCACCCGCCTGCTGCAGCTCTGGGAGAAGAACGGCTACTTCGACGACGTCACCATTCAGCAGCTCCAGAGCCCGGCCCTGGGCCTGGGACAGTATCAGGCGTCGCTCATCACGGAGTACGCCCCGGTGGTGCAGCCCGTCCAGATGGCCTTCCAGCAGCAGATCCAGGCGCTGAAGACGCAGCACGAGGAGTTCGTGAGCAACCTGAAGCAGCAGCAGACGGCGGCGGTAGCAGCAGCCGCGGCCGCCGTCGGTCAGCTGACGCCCGCGGACGCCGACGTGAAGACCCAGGGGCCCTTGACCTCTCAGCCCGCAGACCTGAAGCCTCCGTTGGCCGGTCCTCCACCTGGCGATTACGAGGGTGCTCCGAGTCGCCCGTCCGACTCGAACCCGGCAGCGTCGTCCGACATGCCCTCCTCCAAACAGGGCTGGTTCGATCCGCAGCACAACATGCCGGCCTGGAACCCGCAGCAACCGCCACCGTTCGACCCGACCCAAGCCCCGCCCCCCTGCCCGCCCTGGAACAGCCACGAGGGCATGTGGAACGAGCAGCGGGACCCCAACTGGAGTGGCCCTCGGGACGGGGGCCCCACAGGCCCCTGGAGCGGCCAGAACGAGCCGCCGCCGTCCTGGAGCGGTCAGTTCGAGCAGCCGCCGTGGAGCGGACAGCCAGACCAGCCTCCGCCGTGGGGTCAGAGGGAGCCTCCCTTCCGCATGCAGCGGCCCCCGCATTTCCGAGGGCCCTTCCCTCCTCATCAGCAGCCGCCGCCCTTCAACCAGCCGCCGCCACCTCACAACTTTGGACGCTTCCCGCCGCGGTTCATGCAGGACGAGTTTCCTCCGCGGCATCACTTCGAACGCCCGCCATATCCTCCGCATAGATTCGACTACCCTCAGGGAGACTTCCCAGGAGGGGAGATCGGTCCGCCTCCTCATCATCACCCGAACCAGAGGATTCCTCCGCCCGGGATGTCCGACCCTCCTCCGTGGGGCGGGAACCAGCATCCCGATTTCGGGCCGCCTCCTCACGGCTTTAATGGTCAGGCCCCGCACATTCGGAGGCAGACGCCGTCTCACGTCAGCCAGGACGACCCCAGCCTGGTGCCCAACGTGCCCTACTTCGACCTTCCCGCGGGACTCATGGCGCCGCTCGTGAAGCTTGAAGATCATGATTATAAGCCTCTGGACCCCAAAGACATCCGTCTGCCGCCCCCGATGCCTCCCAGCGACCGGCTGCTGGCCGCGGTGGAGGCGTTTTACAGCCCCCCATCCCACGACAGACCCAGAAACAGTGAGGGATGGGAGCAGAACGGTCTGTATGAGTTCTTCCGGGCCAAAATGAGAGCGAGGCGGAAAAAGGAACAAGACAAACGCAACAGCTCCCGAGGGAGTCCTTCGCGCAGTCGGTCGCGGAGTCGAGGACGATCCACGTCACGCTCCAGCTCCAGGTCTTCCAAATCCTCTCGCTCCAGATCGCGATCCAGATCTCGCTCTCGTTCCCGCTCCTACTCCAGATCTCGCTCCAGGAGCAGGAGTCACTCCAGATCCAGGTCCCGAAGCCGCTCCCGCTCCAGATCTCGCTCCAGATCACGATCTCCAGAAAAGCGCCGCCACTCTGCAAAATCACGCAGCCCGACGCCACCCTCCACATCTGGTTTGGGTTCAGGCCCTGCTGCGATACCACCCGACCTCAGGCTGGGAGAAGAAAACAAGGGCCATCAGATGCTCATGAAGATGGGCTGGAGCGGATCGGGAGGTCTTGGTGCAAAGGAACAGGGCATTCAAGACCCCATCAAAGGAGGAGACATTCGAGACAAGTGGGACCAGTATAAAGGAGTAGGAGTCCCGCTGGATGACCCGTACGTCAACTACAGGCGAAACAAAAGCTACAATTTTGTCGCAAGGATGAAAGCACGAGAAAAAGtaAGCAGAGACCCCCAGGAGCCCTCCAGCACAGAGTGATCACCATCACACATggtcgtttttttttgtcaatgtcATAAActtgttttcatgtttatttgaaaattttcTTATTTCCCTTGGTTCCATTTTGTAGTAAAATGCATCAAAGCGTCGTTGTAACTCAAAAGCGTCGGTGTCATCTCAAGCGTTTCCTTTGACTTAATCTGAGACTCTACAAgcaaaataaagatgttttaaaaag

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12841 CHERP; calcium homeostasis endoplasmic reticulum protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247685.1 lncRNA downstream 79001 2895960 ~ 2898650 (-) True LOC122327605
TU220155 lncRNA downstream 217964 2698113 ~ 2759687 (-) True G148860
TU219965 lncRNA downstream 384922 2591572 ~ 2592729 (-) True G148749
XR_006247728.1 lncRNA downstream 414428 2527094 ~ 2563223 (-) True LOC122327855
TU220234 lncRNA upstream 53154 3041452 ~ 3045417 (-) True G148906
TU220258 lncRNA upstream 69712 3058010 ~ 3058631 (-) False LOC122327369
TU220267 lncRNA upstream 114281 3102579 ~ 3102897 (-) True G148927
TU220496 lncRNA upstream 204990 3193288 ~ 3194804 (-) True G149071
TU220500 lncRNA upstream 235850 3224148 ~ 3224527 (-) False dnase1l4.1
XM_043222649.1 mRNA downstream 5291 2963231 ~ 2972360 (-) False LOC122327346
XM_043222648.1 mRNA downstream 9608 2963231 ~ 2968043 (-) False LOC122327346
XM_043222647.1 mRNA downstream 9608 2963231 ~ 2968043 (-) True LOC122327346
XM_043222642.1 mRNA downstream 23854 2951134 ~ 2953797 (-) True LOC122327343
XM_043223834.1 mRNA downstream 27954 2941004 ~ 2949697 (-) True LOC122328125
XM_043222944.1 mRNA upstream 1972 2990270 ~ 2993545 (-) True LOC122327522
XM_043222782.1 mRNA upstream 10806 2999104 ~ 3002795 (-) True rx1
XM_043222683.1 mRNA upstream 21789 3010087 ~ 3017408 (-) False matk
XM_043222682.1 mRNA upstream 21789 3010087 ~ 3017408 (-) True matk
XM_043222681.1 mRNA upstream 21789 3010087 ~ 3017316 (-) False matk
unassigned_transcript_2543 other downstream 97246 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 98016 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 846368 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 846693 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 846955 2130623 ~ 2130696 (-) True trnai-aau_114
XR_006247638.1 other upstream 267711 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 359122 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 399962 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 703202 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 1168194 4156492 ~ 4158981 (-) True G149491

Expression Profile