RNA id: XM_043222595.1


Basic Information

Item Value
RNA id XM_043222595.1
length 3714
RNA type mRNA
GC content 0.47
exon number 17
gene id bap1
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5764038 ~ 5772073 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atattagaaatattagaaatatcagtgcatttaaaaaggtttcTTACTGTCTAATACCCCAGAATAATCCttcttctttattattattattattattattattactactacactaaactatatacacattataacacattatatgTCATATTAAAAGTATCCATTTTACTTATGCAATATACCTATAAATCACgtaaatcactttttattacataaaacattatgtaaaGTGATATTTAGGCATACATAATGTCCCACATAAACGGTTTAGATAGAGATATAGGACAACCACATACAGGtacaccaaaaataaataaataaataaactgttacGAAACCCGTTTTATCGTGACACTCATCTGTCTTGAACTTCGCAGCGGACGCACGCAGTAATGCGTCATGACGCACGGCGCAGAGGAATGACGTCAGGCACAGTCGACGGCGCTGCTCTTTATGTTTACTAGCCTCTTTGCGTTTACTAGCCGTCCAGATCGTTCAGAGATGGGTCAAATGTGGATTAGGGAATGACCGATGTGGGCTTTTAAACAATAGCATGGACTGGTAGATGCTTTAGCGAAGAGATTTGGCGGCTCCCGATTTCTGCAAACATGAACAAAGGTTGGCTGGAGTTAGAAAGCGACCCGGGGTTGTTCACACTCTTGGTGGAGGACTTTGGAGTGAAAGGCGTTCAGGTCGAGGAGATCTATGATCTTCAGAGCAAATGTCAAAGtCCTGTCTATGgcttcatcttcctcttcaaGTGGATCGAAGAGCGAAGATCTCGGCGCAAAGTCTCCACGCTGGTGGATGAAACCTCGGTCATCGACGACGAGATCGTTAACGACATGTTCTTTGCTCACCAATTGATCCCAAACTCCTGTGCCACTCACGCTCTTCTGAGTGTGCTCCTGAACTGCAGCGGCGTGGAGCTGGGAATGACTCTGAGCCGTATGAAGGCTTTCACCAAGGGCTTCAGTCCCGAGAGTAAAGGTTACGCCATTGGAAACGCTCCTGAGCTGGCAAAAGCCCACAACAGCCACGCCAGACCGGAGCCGCGGCACCTGCCAGAGAAACAGAACGGCATCAGCGCCGTGCGGACGATGGAGGCGTTTCACTTCGTCAGCTACGTGCCGATCAAAGACCGGCTGTTTGAGCTGGACGGTCTGAAGGCGTATCCCATCGACCACGGGCCGTGGGGTGAGAACGAAGAGTGGACAGATAAAGCCAGGCGGGTCATAATGGAGCGAATAGGACTGGCCACTGCTGGAGAGCCCTACCATGACATCCGGTTCAATCTCATGGCGGTGGTTCCAGATCGCAGGATAAAATACGAGTCCAGGCTGGAGATCCTGAAACGGAACAAGCAGGTTATTCTGGAAGGGCTCCAGCAGGTTAGGGAGAAAAAAGTAATTCGAATGACCCAACAAGATTCAGGCCAGGATCGAAAGCAACAAGACTCCTCCTCCTCAGAAGACACGCCTCCTGCTGTGAAAAAGGAGGAGGGGCAAGATACGCCGATACCTTTGTGTACAGAGCAGGCCACACCCACAGAAACTCAGGAAGGTGCCGCGGCTCTCCCAAGTCCCGCTGGAAAAGTCAGACCTATGGCTAAACCTGCCGCCTTGCCAACAGGGGGCGCTCCACCACCAGCCCCTCTACCTGTTCCCAATCCCATCGTCCAGCGTCTGCCAGCCTTCCTGGACAACCACAACTACGCCAAGTCGCCCATGCAGgaagaggaagatcTTGCTGCAGGTGTGGGTCGTTCACGCCTACCTGGCCCACCACAGCCTTCTTACTCTGATGACGAGGATGACtatgatgatgaagaggaggagtgCAGCACTGCAGGTGCCACAAGCAGGGTGCGAAGAAAAGTTGGTCTACGTACAAGGACCATGGGCCGAAGTGGAGTGGGTGCGGTTGGGCCAATGGAGGGTCAGCTAGCACTCAATGTTTTAGCCGAGAAACTCAAGAAGGAAGTCCAAAGGAAGGACTCCATGGCTACAACGGGTTCCACACCTCTGAACGTACGCACCGAGGGTCGCACAGGTGGGATCAGCATCACCTCAGCCTGTCAGCCGTCACCAACTCCCAGTAACGAAAGCACGGATACGGCCTCGGAAATCGGAAGCGCATTTAACTCACCACTTCGCTCGCCCGCAAGATCCCAAGCTGCTACACGGCCCTCCAGCCCTGTGGTGCCCCATTTGAGCCGTGTGCTATTTGGAGAAGAAGAGGGGCTGCTCAGGTTAGATGCCCGACACAATCGAGCCGTCCGGGACTTGGGAGCGCTAGTGAGCTCCACGATGCTGCGACTGCAAGAGGATGGCGTTATGTATGCCTTGCCAGCATCAGAAACGTTGGAAGGATTAAAGAAAGCAGGTGGTgtggagaagaaagagaaagaagaagcaGCTGGTccaggaggagaggaggaagtGAAGGAAGGACCATCAGTGGAGATGAAACGGGAAGATGTCAAGGAGTCAGTGGACGTGAAACCAGACAAGGAGAACCTGCCATCCACCAACACTGAAACCAGCACCAAACCTCCTGGAGAAAAATACACCCCTAAAGAGTTGCTGGCCTTGTTGAAGTACGTGGAAGCTGACATTGCCAACTATGAAgtgtgtctgaaagaagaagtggagaaaaggaaaaagtataAGATTGATGACCAAAGGAGGACTCATAACTATGATGAATTCATCTGCACCTTCATATCAATGCTGGCACAAGAAgGTATGTTAGCGAGTCTGGTGGAGCAGAACATCTCCGTGCGTCGCAGACAGGGTGTAAGCATTGGCCGGCTCCACAAACAACGGAAACCGGACCGGCGGAAACGTTCTCGACCGTACAAGGCCAAGCGccaataaatgctaaaatggtGGCAACTCGACCACTCAATCTTTTTGAAACATTGTCCAGAGActtttctgaagacaaacaataCCAAACACCTCACTGACTGACAGTGTTAGATAttaagagggttttttttttttttttttttaaatcaagctttgtttcaaataataaaCCATTTACAAGTACATCACCACTTCTAAACCAAATTGGTGATGCTCAGAAGATGTTTAGAGATACTTTTCATGCTGCCATTACTTCATGTACTGTATCAAGCTAATTATAAAACCAACAATCATTAGAGCACCATACTGGGAAAATGACTGACTAGCTTGACTGAGTATTGGGCTGAACTGATTTAAGCTCTAAATGACAAAGATTCCAAggaatatattttcagaaatccCAAATATCTAGTCATGGTCCTACCAAAGATAATGGCTCCCCAAATCCATTCTAACAGTGCAGGGGATGTCTGTTGTTAACAAATGGACCAGTTGCCAATCTGGATGGGATTCTAGAGATATGCTTTCCGAAGTTCACCACAGTTTTGCTCAAAATATTAACGGACAAAAAGAATATGTTAAGACTGTAAACCTGAGTTGCTGTGCGAATGTGTATTGACTCATGTCATACAAATCCCGCAAGAGTTAAATAGAGGGTTTTGGTTGAAGTTTACTTGTTCTTCACAGTTTTCTTGatgattgtttttattggtAAGGAATAGGCCAGTGGGCTTTGTCTCAGacatgtttctgtttgtttgtacatatgtatttgtgtattacCTGATGTCTACCCAGGACTATCAGATCtagaaattgaaataaatgtttcgAATTACAA

Function

GO:

id name namespace
GO:0035522 monoubiquitinated histone H2A deubiquitination biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0001558 regulation of cell growth biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0035517 PR-DUB complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222313 lncRNA downstream 83 5758324 ~ 5763955 (-) False LOC122327537
TU222267 lncRNA downstream 101850 5661750 ~ 5662188 (-) False nol8
TU222173 lncRNA downstream 108662 5654051 ~ 5655376 (-) True G150126
TU222262 lncRNA downstream 159620 5604157 ~ 5604418 (-) True G150184
TU222171 lncRNA downstream 180997 5579470 ~ 5583041 (-) True G150125
TU222203 lncRNA upstream 50856 5822929 ~ 5823913 (-) True G150152
TU222347 lncRNA upstream 79212 5851285 ~ 5851890 (-) True G150232
TU222348 lncRNA upstream 82128 5854201 ~ 5854403 (-) True G150233
TU222349 lncRNA upstream 82712 5854785 ~ 5855167 (-) True G150234
TU222402 lncRNA upstream 372805 6144878 ~ 6155016 (-) True G150271
XM_043222975.1 mRNA downstream 56 5758006 ~ 5763982 (-) False LOC122327537
XM_043222973.1 mRNA downstream 56 5758006 ~ 5763982 (-) False LOC122327537
XM_043222974.1 mRNA downstream 56 5758006 ~ 5763982 (-) False LOC122327537
XM_043222972.1 mRNA downstream 56 5758006 ~ 5763982 (-) False LOC122327537
XM_043222971.1 mRNA downstream 56 5758006 ~ 5763982 (-) True LOC122327537
XM_043222977.1 mRNA upstream 17742 5789815 ~ 5793054 (-) True LOC122327539
XM_043222613.1 mRNA upstream 67675 5839748 ~ 5846930 (-) True sass6
XM_043223026.1 mRNA upstream 87274 5859347 ~ 5861332 (-) True timm13
XM_043222548.1 mRNA upstream 110753 5882826 ~ 5922490 (-) False arhgef18b
XM_043222550.1 mRNA upstream 110753 5882826 ~ 5922459 (-) False arhgef18b
XR_006247631.1 other downstream 111880 5644413 ~ 5652158 (-) False nisch
XR_006247648.1 other downstream 221958 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other downstream 221979 5538561 ~ 5542059 (-) False bloc1s1
XR_006247634.1 other downstream 231229 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 610182 5145926 ~ 5153856 (-) True LOC122327354
TU222175 other upstream 87274 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 217427 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 464179 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 510383 6282456 ~ 6285577 (-) True gcga
TU222663 other upstream 845502 6617575 ~ 6659352 (-) True G150440

Expression Profile