RNA id: XM_043222611.1


Basic Information

Item Value
RNA id XM_043222611.1
length 3576
RNA type mRNA
GC content 0.44
exon number 4
gene id wu:fc11c11
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3239109 ~ 3243922 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGTCTTTTACTTCTGTACGATTTTGTTGTGGAGTGAAGACTTTCTGCAGGTTTTGCTGTTCATATTTAGACGTGTTCGTTCATAAATGGATTGCGAAAGAGCCTTGGGGGAACATAAAGCAAACACGCTTGATTTCAAAGCACCCAATCAGGATATATCCCTGTACGGGATACCTGGTGCGTTTTCAGGGCGGGTCTGGCCAATGTCTGGATGGCAAATGTTGAGAGACAACAACAATAGCGAATGAAAGCGCGTTCGCAGTGGTTGAGGGGTTTCTTGCATCTGCAAGCCATCTCCTCATGGGGTCTTTCGCTCACTTTGCTGGAGCGAGTCCTAACCTGCGAGCCTGTGCAACCATGGATGCGCGTAATAAGAAGACGGTCGATAGCTTTATGAACAGTGATGAAGAACACGACAAGACGAAAGAATGGGAAGATTTATCCGACGAGGAGAGCGTGGCTTCTAGCGACTCTGCGGTAGAGAAGATGTCCATCGATGATCTCGGAACACTTCTGGATGAGTTCACAGATGTCTCTGGTGATGATGACTGGTATCCAGAGGTCAGTCCACGAAAGAAGAAGAGATCCGGACTGTCTTCCGCATCGCCATCTCCAGCAAAGTCTTGCAGGTCTGGTTCGGCTGCCCCTGTGCAAAGTAGCAAAAGCAAACGTAGGAGAAGCAGTGCAAGTCGATCCCTATCTTTTTCCTTAAGCGTCTCAGATAAGAAATGGAAAAGCTCAGATGAGCCTGATGTTGAACCGACACAGCCAATATTCAGACCTAGAGAAACACCTGGCCCACAGCTGGTCTCCAGTGCATCGTGCAGTCCTCTGCAGTATTTCGAGTTGTTCTTTTCCAAATCGGTCCTGCGCACAATTTTAGCGAACTCGAATGCATACGGGGCAATGCGTCAGGAAGGAACGAAGAAACCATGGGAGGACATTTCAATTAAAGACCTGAAGTCGTTCATGGCACTGGTGATTTACATGGGTTTGCTGAAATGCTTCCAACTGACAGATTATTGGAGGAAGTCTTCGATATATAACCTTCCCTATCCTTCCCAAATCATGTCTAGCAGGAAGTTTATGACCATCAGTAAAGCCCTCCATATTAGTGATCCCGAAGTGGACGCAGAGAACGACAAGAAAAGAGGAACACCTGAATATGACCGCTTGTGTAAGATCAAACCGCTGTACCAGGACATTAGGGACGCCTGCAGAGCTTCTTTTCATCCCTTTCAGAACATCTCCATTGATGAACGAATGGTGGCATCGAAGGCTAGAAATGGACTCAAACAGTACATGAAGAACAAACCTACGAAATGGGGCTACAAGCTTTTTGTTTTGGCAGATTCCATCTGTGGCTACACGTGGGACTTCTTCATTTATGAAGGGAAGGCCAATTCGGAGGAGAGCAAAGGCGTTAGTTATGATTCTGTCATGATTCTTGCAAATGAAAGATTGCTGGGAAGCGGCTACAAGCTGTTTGTTGACAACTTTTACACCAGTCCCAAACTCTTCAGAGATCTGCTCCGGAAAAAGATCTGGGCTTGTGGCACAGTTCGCGCGAACCGCATTGGCCACTTGAAGAAACAGGCTCCTCGTGGCAATATTCGCTGGTTTAGGGAAGACGATCTTCTGTTTGTTGAGTGGAAGGACAAGAGGGATGTGCTGATGTGCTCCACCTTTCACAAAGCCTTTAATGGGGACACAATTAAGAGGAATGTCAAAGGAGCCAATGGAGTTTGGGCCATTCAGGATTTCCCCGTTCCAGCCGCAGTGCTGGACTACAACAAGCACATGGGAGGAGTGGATCTGTCTGATgcacttatttcattttacaccgttttacataaaacaagaaGGTGGTACCGGTCCTTTTTTTACCACTTTGTCGACATCGCCATAGTCAATGCCTTCATTTTGCACAAGCAGATAGCCAAGATGAAGAACCAGAAGCCTCTGACCCAGAAAGCCTTTCGGGAGGCGCTTGTTACCGAGCTTGCGGGAACAGGATCAGTGTCGGGCCCTGCACAAATCCGCCCGACTCTTACCCCTTACTCCCATTTGCCCAAGTACATCAGTGGGGACAGCAGCATTGGAAGGCGAAAGTGCAAAATTTGCCACAACAAAACTCCAGTCATGTGTGTGACTTGTGATGTGGCGCTTTGCTTCGTTCCCAAGCGTGATTGTTTCACTAGCTGGCATTACCCAGACAGCAGCAGTGACAGTGAGGCAGAGTAAAGTCTAGTCTGCGCTAGTTCCGAAACGAGACGCAAGAAAAACAACACTGGAGGATAAAAGCAGCATAGTAATGTGAATGGAATGTGATGAGAGAGGAAAACGATTGCAGAATAACACAGTCGGTCTGCAAAATTAAACGCGTAGTACAGCGCAACTAGCCAGTTAGAATCTATTTTCTGGCAAGGTTGTAAGTCTTAAAGGAAAGGTTtaccaaaaaaattgtttacttagcttcaagtagttccaaacctgtatgaatttctttgttctgctgaacacagaggaagatattttgaagttttgggtcaccatcgacgtccatagtaggaaaacaaatactatggaagtcaatggtgaccctaAAAGCCTGGTTGAAATATTGCTTTAAGCCATTGTAGTTACTAAAAcgtgttaatattttataaaatccaCAAAAAGTAATGATTTCAGTAATACAATCGCTAACAAATCAAGTCCGTTAAATCGTAAATGaattgttaatttcttttataattCTTATCACTtcttgttcatgtgtgtgtacCTTCTCCTAATACTGTATTTCATGCGAAATATTCCTGCTTTATTCATGCAATATTATGCCAATAATCTTGTAAATCTTAGTCttagattaattttatattcatataagaCCTGTTGTAAATAGAGCGCATTCCTGCTTATATTTCTTTATCGCTGTTTATTCTATGATAAATGAAGGAAGGATAGGAAAGGTTAGTGACTCCATATCAGAAGAGATGTTCATCGATGGACTTGATCCCCTCCTTAATCGCCGACTCAGCCAAACTTCCGACGTGTCCAAACACCTGGTTCGCAGAATTTTGAACGGTTCTTTTCAAAATGAATCCCGCAGACAGCCGTACAGTACGTGCCTAGATGCCAGGAAGGAAAGAAGAAGCTGTGCCATTTTTACCTTTCCTGTCACTGGTGATCTACATGGATCTGCTGAGTCGGACTATTGGAGGATTTCACACATCTACAGACTACTTTATGACCACTTGTGACGCAGTCAACAAAAATAGTGGTACAAACATTTATTGCTAcctaattgttttatttcatcttcAAAACTTCTTGCGCGTCTAATCCCGTTTGTAAATGCTTCCTTGCTAATGAAGGTTGCTTGATTCGTTGAAGGTAAGTGGACTGTTGTAATTGATTTTGGTAACGCAGAAGCTGGCGTCCATGTTAACTGACTTGCTTGTTAATTGACTTGTTGCCACAAGCTAAATTTGAGTTAGCCAAGGGTGCTTGAGGCATGATTTTTACGCAGCAGCAGTGGTTTGGCATtcattgcttgtttgttttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220502 lncRNA downstream 3350 3233672 ~ 3235759 (-) True G149074
TU220500 lncRNA downstream 14582 3224148 ~ 3224527 (-) False dnase1l4.1
TU220496 lncRNA downstream 44305 3193288 ~ 3194804 (-) True G149071
TU220267 lncRNA downstream 136212 3102579 ~ 3102897 (-) True G148927
TU220258 lncRNA downstream 180478 3058010 ~ 3058631 (-) False LOC122327369
TU220509 lncRNA upstream 7327 3251249 ~ 3251471 (-) True G149081
TU220574 lncRNA upstream 106171 3350093 ~ 3353485 (-) True G149111
TU220577 lncRNA upstream 106532 3350454 ~ 3351332 (-) False G149114
TU220578 lncRNA upstream 106776 3350698 ~ 3351474 (-) True G149114
TU220575 lncRNA upstream 124228 3368150 ~ 3372307 (-) True G149112
XM_043222892.1 mRNA downstream 6896 3224335 ~ 3232213 (-) False dnase1l4.1
XM_043222893.1 mRNA downstream 9867 3224335 ~ 3229242 (-) False dnase1l4.1
XM_043222891.1 mRNA downstream 9867 3224335 ~ 3229242 (-) True dnase1l4.1
XM_043222698.1 mRNA downstream 15608 3220932 ~ 3223501 (-) False ccdc51
XM_043222697.1 mRNA downstream 15608 3220932 ~ 3223501 (-) True ccdc51
XM_043222942.1 mRNA upstream 8191 3252113 ~ 3253715 (-) True LOC122327520
XM_043222719.1 mRNA upstream 11474 3255396 ~ 3273042 (-) True cers5
XM_043222803.1 mRNA upstream 29213 3273135 ~ 3277399 (-) True LOC122327437
XM_043222656.1 mRNA upstream 36687 3280609 ~ 3286516 (-) False LOC122327353
XM_043222655.1 mRNA upstream 36687 3280609 ~ 3286516 (-) True LOC122327353
unassigned_transcript_2543 other downstream 358704 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 359474 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 1107826 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 1108151 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 1108413 2130623 ~ 2130696 (-) True trnai-aau_114
XR_006247638.1 other upstream 12087 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 103498 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 144338 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 447578 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 912570 4156492 ~ 4158981 (-) True G149491

Expression Profile