RNA id: XM_043222638.1


Basic Information

Item Value
RNA id XM_043222638.1
length 2212
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC122327340
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4042658 ~ 4046708 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCGCAGTTCTGTCTCAAACTTTGCTTTTTAATATGACGATGACGCTTTCCAAGTTATATAGTTTTAGGGTACcgtgttttaatatattgacATTGGATGAAAGAAGTCACAAAAACGAATAGGGCGATTTCCGCTTTCGGATCCAGCTCAATCTCCAGCTGGTtactttcagtttttaaatgcaggCAGTAAAGGCGTTGTCAATGGCGTTTGAACGACTGCGCCGCATTATTATCTCAAAATGACAACGGTGAAAATGGATTATTTTTGGTCGGCAGTGATTTTGCTCGTGACTGgtgCATCTGCGGTGAAGATAGATGGGGTATCAGTGTCATTGATGGAAGGAGATACGATCACTCTACACACTGGTGTTACTGAAACCGAAGGCAAAAAAATGCAGTGGTATTATAATGGCACTCGCATTGCTCGAATCACTGGAGATCCCAATAAGACCTGCACAGATGTTCAGTGTATGGAAAGAAATCGGAGATTCAGAGGCAGACTGTATCTGGATCaccagactggatctctgaccatcagaaaCATCACAAGCACAGACTCTGGAGAATATAAACTACAGATCATCATCCCCAGCATCAGCAGCACTGACAAGATCTTCAATGTCATCATTAATgGTCATTCTGCTGCTGAAAGAGAGGAAATGAGGAGAAAGTCGGTTAAGGAGGGGGGATCCGTTACTTTGGATCCTGGTGTGATAAAAACCCCTAACGATTTGATGAGGTGGCATTTTAATGACATTCCCGTCAATGAAATCCCTGGATATCTGAGTAGGAGCTGTGCAGATGTTCAGTGTAAAGATGCTGATGAGAGATTGAGAGACAGACTGGAGGTGAATCAGaccggatctctgaccatcacgaaCACCCgaaccacagactctggactCTACAAACTACAGATCAACGGCAGCGGATTCAGCATCATGAGGACATTCAGTGTTAATGTCACTGCTGTTCCAGATTCAGGTCAGTCTACAGTTGTTGTAGCAGGAATATGTGCAGGTGTTGGTCTGCTGGTGTgtgcagctgctgctgctgctgtgatTTGCTATTGCCGCAgacaaaataaagGCAACAGGAAGCAGCACAATGGTATAGAATTGACATCCCATAATTGCAGTAACCCTAATTCGGACATTATTGACAGGACAACTCCTAATCAAAATGACCCTCAGGACACTACTGATGGGACGTCCCATCCTGAGAAAGCCCCATTAATGGAAGCCATAAAAGGAATATCCCCTAGTCTCAATGGCCTTCAGTTTAAGGACACTACCGATGGGACGTCCCCTACACAAACTGACCCTCAGTTGGAGGACACTACCGATGGGACGTCCCCTACACAAACTGACCCTCAGTTGGAGGACACTACCGATGGGACGTCCCCTACACAAACTGACCTTCGGTTGAAGATCACTACTGATGGGACGTCCCCTACACAAACTGACCCTCAGTTGAAGGACACTACCGATGGGGCGTCCCCTACACAAACTGACACTCAGTTGAAGGACACTACCGATGGGGCGTCCCCTACACAAACTGACACTCAGTTGAAGGACACTACTGATGGGACGTCCCATCATGAGAAAGTCCCATTAATGGACGCCATGAAAGGAAAATCACCTAGTCTCAATGGCCCTCAATTTAAAGACACTACTGATAGGACATCCCATACACACAATGACCCTCAATTTGAGGACATTACTGATGGGACATCTGATATCGAGTTTATAGATGCTTGAGAATGAGTCACTCACAGCCAAATATGTTTCGTTGACCACTCAATCAGACTAAAAAGCCTTCATGTGAACACCTTAATCAATCCAAATGAGCTCGATCTGACCGGATTGAAAGGGGTTCAAGAGTGCATGGAAACACTGTGATGCAGAAATGACATAGCTGTATAAATGAATGTCCCGTCATCAACAACAATCCTCGCGCTGTCCATCCGTGAAGTGGAGCAGGGCAACATCCCTCCAGTCCCGATTTCATATTCTCATCCAGAGACATCTGGTTTCTGCATGGTAACATAGCCACTGTTTGTTAAGATGATGAACAATGCCTGTGAATGGCAATCCTGCACACAGATGTTTTAGATCTCTCGTTTCCTTCAATTCTTGTCTTGAAACACGTTCATATGCTGCTTGTATTCtctattacattttttccataaaaatggaaaagccTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247673.1 lncRNA downstream 3243 4038002 ~ 4039415 (-) True LOC122327593
TU221093 lncRNA downstream 7921 4019284 ~ 4034737 (-) False G149458
TU221099 lncRNA downstream 21061 3974163 ~ 4021597 (-) True G149460
TU221100 lncRNA downstream 26564 3987404 ~ 4016094 (-) True G149461
TU221084 lncRNA downstream 38013 3975931 ~ 4004645 (-) False LOC122327411
TU221092 lncRNA upstream 3172 4049880 ~ 4054869 (-) False G149458
XR_006247676.1 lncRNA upstream 7395 4054103 ~ 4055280 (-) True LOC122327596
TU221109 lncRNA upstream 14652 4061360 ~ 4063492 (-) True G149467
TU221122 lncRNA upstream 32659 4079367 ~ 4080049 (-) True G149474
TU221120 lncRNA upstream 32948 4079656 ~ 4080049 (-) False G149474
XM_043222764.1 mRNA downstream 289 3993700 ~ 4042369 (-) False LOC122327411
XM_043222767.1 mRNA downstream 289 4003585 ~ 4042369 (-) False LOC122327411
XM_043222762.1 mRNA downstream 290 3996707 ~ 4042368 (-) False LOC122327411
XM_043222761.1 mRNA downstream 290 4002507 ~ 4042368 (-) False LOC122327411
XM_043222766.1 mRNA downstream 36006 4002507 ~ 4006652 (-) False LOC122327411
XM_043222685.1 mRNA upstream 34532 4081240 ~ 4089707 (-) True LOC122327368
XM_043222965.1 mRNA upstream 113342 4160050 ~ 4171891 (-) False LOC122327533
XM_043222963.1 mRNA upstream 113342 4160050 ~ 4171891 (-) False LOC122327533
XM_043222966.1 mRNA upstream 113342 4160050 ~ 4168646 (-) True LOC122327533
XM_043222964.1 mRNA upstream 113342 4160050 ~ 4162982 (-) False LOC122327533
TU221027 other downstream 163942 3691500 ~ 3878716 (-) True G149410
TU220553 other downstream 627947 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 693486 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 769607 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 1162253 2880334 ~ 2880405 (-) True trnad-guc_19
TU221146 other upstream 109784 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 383062 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 383062 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 383087 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 383093 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile