RNA id: XM_043222642.1


Basic Information

Item Value
RNA id XM_043222642.1
length 1841
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC122327343
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2951134 ~ 2953797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACAATTGTGTTTCAGAGACGTCTAGCCCTGCTATCGTGGGCTTTTCAGAGAACCGATGAGGAAAATGTTTCTCgagtttgttttgttctttttgtgctTGTGGCGTCTGGAAGGAGTGTTTGGGGATGATGAAGCGAGGTCAGTgtcagtgatggagggagattcagtcactctaaAAACTAGTCTGACTGAATTAATTGATGATGATCTGATTCAGTGGAGGTTTGGGATAGAAATAACTTTATTGgctgaaatcaataaaaaggCTGATAGAATAGCTGTGtatgatgatgttcttgacgGGAGATTCACAGACCGACTGAAGCTGGACAAACAAaccggatctctgaccatcactaACACCAGAACTGAAGATACTGGACGTTATTTATTACTGATAAACCACATGAGCATCATTTTCACTCTCATCGTCTCTGaaataaagatggTGTCAGTGaaggagggagattcagtcactctcaACTCTGATCTTACTGAAGTAAAGGATGGTGATGAGATTCAGTGGTGGTTTGGAAACACTTTAATCGCTGAAATCAATAAACAGACCGACATCATGACTGTatatgatgatgttcttgacgggagattcagagacagactgatgCTGGACAAACAAAGAGGATCTCTAACCATCACTAACATCACAATGAAACATGCTGGAGCTTATGTAACACTGATCAATCATATCAGGATTTATTTATATCTCATTGTCTATTATCACGTTGCAGTGCTTGAGGGAGATTCAATCACTCTGAACTCTGGTCTCACTGAAATGAAGGATGATGATGAGATTTTGTGGAAGCTTTGGATTGAAAACACTTTGATAGCTGAACTTAACGTAACCGCTAAAGGCATCGATGTATATGACGAGCACATTTATGGGAGTTTCAGAGGCAGACTGAAGGTGGATGTTCAAACCGGATCTCTGATCATCACAGACGCTAGGTTTCACCACAATGGACGTTATGAATTACTGATCAACCAcgtcacaatttatttttttctcaatgtcTATCGTGAAATATCAGCGATGGAGGGAGATTCGGTCACTCTAGATTCTGATTTTTATGAAATGGATGATTATGTTATTCAGTGGGCGTTTTGGACTGAAAACACTTCAAGAGCTATAATCAGTAAAGAGGTTAACAGAAATACTGTCTATGATGTTCTTgacgggagattcagagacagactgaagctggacgaTCAAaccggatctctgaccatcatgaacaccaCAAATGAACATACTGGAGTTTATTATCTGCAGATCAACAATGACAGCTGGTCTTTTTATTATCTCGCGGTCTACGCTCATCTGCCTGTTCCTGCCATCAGCAGAGActgttcttcatcatcatcatcttgttCGTTGTTGTGTTCGGTGGTGAACGTGGGTCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacatctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACATCAGCAGACTCTGTCACACGTGTTCAGACTCTGAACACTGCTGTGGTTTTACTGAAGCTGTGATCCGATTGGCCCTCTCCGCTCTGGTGGGCGTGGCTACAGTCCTGTATATCTGATCCAGAAGAGATCAAGCACATATTCACACAGCAGGTACCTCATTGATAATACAGTTTCTCATAaagctgtttattatttataataatgttcatttatttgtatttggttttgtatttatattcacatactGGTATGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04530 Tight junction
ko04670 Leukocyte transendothelial migration

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247685.1 lncRNA downstream 52484 2895960 ~ 2898650 (-) True LOC122327605
TU220155 lncRNA downstream 191447 2698113 ~ 2759687 (-) True G148860
TU219965 lncRNA downstream 358405 2591572 ~ 2592729 (-) True G148749
XR_006247728.1 lncRNA downstream 387911 2527094 ~ 2563223 (-) True LOC122327855
TU220234 lncRNA upstream 87655 3041452 ~ 3045417 (-) True G148906
TU220258 lncRNA upstream 104213 3058010 ~ 3058631 (-) False LOC122327369
TU220267 lncRNA upstream 148782 3102579 ~ 3102897 (-) True G148927
TU220496 lncRNA upstream 239491 3193288 ~ 3194804 (-) True G149071
TU220500 lncRNA upstream 270351 3224148 ~ 3224527 (-) False dnase1l4.1
XM_043223834.1 mRNA downstream 1437 2941004 ~ 2949697 (-) True LOC122328125
XM_043222701.1 mRNA downstream 59368 2888182 ~ 2891766 (-) True calr3a
XM_043222699.1 mRNA downstream 63640 2880554 ~ 2887494 (-) True rad23ab
XM_043223943.1 mRNA downstream 72313 2876058 ~ 2878821 (-) True LOC122328226
XM_043223082.1 mRNA downstream 101575 2784678 ~ 2849559 (-) True fbn2b
XM_043222649.1 mRNA upstream 9434 2963231 ~ 2972360 (-) False LOC122327346
XM_043222648.1 mRNA upstream 9434 2963231 ~ 2968043 (-) False LOC122327346
XM_043222647.1 mRNA upstream 9434 2963231 ~ 2968043 (-) True LOC122327346
XM_043222581.1 mRNA upstream 23854 2977651 ~ 2988298 (-) False LOC122327311
XM_043222580.1 mRNA upstream 23854 2977651 ~ 2988298 (-) False LOC122327311
unassigned_transcript_2543 other downstream 70729 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 71499 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 819851 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 820176 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 820438 2130623 ~ 2130696 (-) True trnai-aau_114
XR_006247638.1 other upstream 302212 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 393623 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 434463 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 737703 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 1202695 4156492 ~ 4158981 (-) True G149491

Expression Profile