RNA id: XM_043222652.1


Basic Information

Item Value
RNA id XM_043222652.1
length 2211
RNA type mRNA
GC content 0.50
exon number 13
gene id rbck1
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5550629 ~ 5558239 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACTTCCTGATACACTTCGTTTCGCTTTTCATTTCTGCAAACTTTCCCGATTTCGAGAAGAGCTCGGATGCGTTGATCAGCACCGTATCGTTTAAAGTATAAACACGAGCACGAAGAGTGTTTGGAGTATTGTCGTCCTATGCTCGTTTCAAGGTTAAGGTATGGCTGCACTAGATGCCTGTAGAAATATTAAAGAAGCCGAAGATGCAGCTCAGAGGCTGAGCGACGCCATCAACTTCAGAGACAAAGATGAAGCGACCAAATACCTGAATCAGCTCCTGGATCTGAATCTCCCAGTGTGTGTCAAAATAAATCCTAAAGCGTACTCTGAAGACAGCATCAGGTTGAGGGTCGGAGTGGCAGATGCGGCATCGGACGTCCACATCCCAATAACGGTGATGGTACCGGTTTACATGACCATCTCAGAGCTCAAAGAAAAGATCAGTCACGACTACGGCTTCCACCCGGTCCTGCAGCGCTGGGTCATCGGGAAGCGTCTCGCCCAGGACAGAGACACCTTGTATCATTACGGGGTCAGAAACCACGACGATTCggccttcctcttcctcctcactGCCAGGGCCGCCAATCTGACCCGCGAAcaagagaggaaagagaaagaggacagACGGATCGATGAGATAATAGAAGTGGTGGAGCGTCCACCTCATCGCTCTCCAGAGCTGATCGCCAGGGGAGCCAGTCACCACCCTCCTCCACCTCCCAAACCTAAGCCGGTCGGTTGGTCGTGTCTTGGCTGCACGTATCTCAATAAACCGACACGTCCGGGTTGTGAGATGTGTGGCACAGCGAGGCCTGACAACTACACCGTGCCTGACTTGTACGAGCCGGACGAGGCAGAGATCAGGAGACTCCAGCAGGAGGAACTCGCCAGCCTGCAGTACGAGCAGTCTGTAAAGGATGAGCGGGAGAGGAACTTCCAACAACTCCTGGAAACGGACTCCCACAGTCTGGTGGGGAACGCGGATGCGCTGGATTGCGCCATCTGCTTCAGCACCATCGAGCCGGGAGAGGGCGCCGTGCTGAGAGAGTGCCTGCACAGCTTCTGCAGGGAGTGTCTGAAGGAAACGGTTCTGAACTGCGCGGATGCCGAGGTGGCTTGTCCTTTCAGAGACGACGCTTATTCCTGCAACTGCAAGCTTCAAGATCGAGAAATCCGATCGCTTCTCTCTCAGGACGAGCACCAGAAGTTTCTGGAACTGCGTCTGAACATCGCGGAGTCCCGCAGCGAGAACAGCTACCACTGCAAGACGCCCGACTGCGCCGGCTGGTGCATCTTCGAAGACGACGTGAACGAATTCGCGTGCGACATCTGCAGCGAGACCAACTGCATCCTCTGCAAGGCTATTCACAAGGGAATGAACTGCAAGGAGTACCAGGATGATCTTCGCGTTCGAGCGCAGAACGACGACGCGGCCCGACAGACCGCCCAGATGCTGGACCAACTCCTGAAAAACGGCGAAGCGATGAACTGTCCCAGATGTCAGGTGATCGTCCAGAAGAAGGACGGCTGTGACTGGATCTGCTGTCTGATGTGCAAGACGGAGATCTGCTGGGTGACCAAACAGGCCCGATGGGGTCCTCAGGGCGCTGGAGACACTTCAGGCGGTTGCAGATGTCGGGTCAACGGAGTCCTCTGCGATCCACGCTGCCAGAACTGCCACTGAACGAGCAAAAACACTCGTGCAACACGCAGTTTGCGATTATAGCTTTAATATTTACGTCTCGTCATATCACCGGCACATTACTCCAGACGTCTGTATTTAATTGATATGTCCTAGGACTAAATATTTAGAACATGTTTACAAATGGAAACTAGCTGAGGTTTCATGGGATAGTATGAACTGATAGAGAAAGGACTTAAATCACTACCATTTTCCTGTAATCTGATGCTCTGGGACTTCGTGCAATGATACCGTAGGAGCATTATTGTATTTAGATCttcatttccttaaaaaaaacaaaaaaaaaacaattggtTTTGGATCCAAAGATTTCTTTGTTGTAAATCACAGCGTATACGATATGGAGCAATGAAGGAAGAACCGAAGAAAACGACGTAATTctagattaatttaaatgcagaaaaatgaatattctaatattttcgtatgtattttttttaaggcaatTTCGGTGTGTTGTTTGCAATATTTTACGATTCAATAAAGCTGTCATTCAAAAACGGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0071797 LUBAC complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10630 RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222216 lncRNA downstream 4861 5545268 ~ 5545768 (-) True G150161
TU222166 lncRNA downstream 37662 5508570 ~ 5512967 (-) True G150121
TU222121 lncRNA downstream 44477 5497941 ~ 5506152 (-) True G150092
TU222122 lncRNA downstream 96297 5451436 ~ 5454332 (-) True G150093
TU222101 lncRNA downstream 103153 5441543 ~ 5447476 (-) True G150086
TU222171 lncRNA upstream 21231 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 45918 5604157 ~ 5604418 (-) True G150184
TU222173 lncRNA upstream 95812 5654051 ~ 5655376 (-) True G150126
TU222267 lncRNA upstream 103511 5661750 ~ 5662188 (-) False nol8
TU222313 lncRNA upstream 200085 5758324 ~ 5763955 (-) False LOC122327537
XM_043223015.1 mRNA downstream 8549 5539927 ~ 5542080 (-) False bloc1s1
XM_043222783.1 mRNA downstream 14056 5533196 ~ 5536573 (-) True rdh5
XM_043222608.1 mRNA downstream 17820 5527230 ~ 5532809 (-) False gls2b
XM_043222607.1 mRNA downstream 17820 5527230 ~ 5532809 (-) True gls2b
XM_043222609.1 mRNA downstream 20015 5527230 ~ 5530614 (-) False gls2b
XM_043222522.1 mRNA upstream 48805 5607044 ~ 5634799 (-) True stab1
XM_043222555.1 mRNA upstream 79899 5638138 ~ 5652155 (-) True nisch
XM_043222556.1 mRNA upstream 86277 5644516 ~ 5652159 (-) False nisch
XM_043222551.1 mRNA upstream 103502 5661741 ~ 5672809 (-) True nol8
XM_043222858.1 mRNA upstream 123352 5681591 ~ 5687034 (-) True ogna
XR_006247648.1 other downstream 8549 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other downstream 8570 5538561 ~ 5542059 (-) False bloc1s1
XR_006247634.1 other downstream 17820 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 396773 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 813769 4716738 ~ 4736860 (-) False LOC122327545
XR_006247631.1 other upstream 86174 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 301108 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 431261 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 678013 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 724217 6282456 ~ 6285577 (-) True gcga

Expression Profile