RNA id: XM_043222683.1


Basic Information

Item Value
RNA id XM_043222683.1
length 2392
RNA type mRNA
GC content 0.44
exon number 13
gene id matk
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3010087 ~ 3017408 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCATGAATAGTGGTGGAAAACACGTCAGAGGCACGGCGTGAATAACAGGAGGAAGTGAGCGGGTGTAATAAACCTCTGATGAGCGTGTAACCGCTCACATGAAGCGACACCCGCAACACAATCGCCAACGAACTCGTACTGGTTAAAAGTCTGAAGATCTTCAGATGTTCATTGCTCAATAAACACATGGCGATGAGCTGGATGGCAGGTACGCAGTGCGTCGCCAAAAAGCAGCACTGCAAGCCCAAAGCCGGTGAAATGGCGTATTACAAAGGCGACATCTTGACAGTCGTCGGACCAGGAACGAGGAAAGGAGAATACAGAGCCCGACACAACACAACGGGAGAGGAAGGATTGGTTTCGGGTTCGAAGCTCCGAGAAAGGGAAGCCCTCCGTATCGACCCCAAATTAAGTCTGATGCCATGGTTTCACGGGAAAATATCAGGAACGCAAGCCGTCGGCAAACTCAAGCCGGCGGAGGACGGCCTTTTCTTGGTGCGGGAGTCGGTTCGGCATCCCGGCGACTTCGTGCTGTGCCTCTGCTTCGGTCGGAAGGTCTTTCACTACAGAGTGGTCTTCAGAGACGGCAAGCTGAGCATCGACAGCAAGCAGTTCTTCTACAACCTCATCGACATGATCGAGTTTTACAGCAGAAATCAAGGTGCCCTCGCCACGCTTCTGCTGAAGCCCAAGAAGAAGGAAGGCACGAAATCCGCCGAGACGAAACTGTTGAAATCCGGCTGGCTTCTGGATCTGTCCAAGCTAACCGTAGGAGAGACCATCGGAGAGGGAGAGTTCGGTGCGGTGTTCGAGGGTGAATACGCAGGTCAGCGGGTCGCCGTCAAGAACATCAAGTGTGACGTGACCGCTCAGGCCTTCCTCGAAGAGACGTCCGTCATGACGAACCTCCATCATAAGAACCTGGTGAGGTTGTTGGGAGTGATTCTTCACAACGGCCTTCACATCGTCACGGAGCTCATGGCGAAGGGGAACCTGGTGAACTTTCTCCGCACGCGAGGACGTTCTGCGATCAGTCCTGTGCAGCTGCTGCGCTTTTCACTAGATGTTTGTGAAGGTATGGAGCACCTGGAGTCCAAGAAGCTCCTGCACCGAGATCTCGCCGGACGCAACATCCTGGTGTCTGAAGACAGCGTCGCCAAAATCAGCGACTTCGGTCTGGCCAAGGTCAGTTCAACGGCGACGGACAACTCCAAGTTACCCATCAAGTGGACGGCGCCCGAAGCCCTGAAGAACAAGaagTTCTCCACGCAGTCAGACGTCTGGAGCTACGGAGTCCTTCTGTGGGAGATCTTCTCGTACGGGAGACAGCCGTATCCCAAAATGTCGGTGAGCGAGGTGAGGGAGCGCGTGGACCAGGGTCACCGCATGGAGCCGCCGGACCAGTGTCCTCCCGACGTCTACGGCCTCATGACGTCCTGCTGGGAGACGGACCCCAAGAGAAGACCGTCCTTCCACAAGCTCCGAGAGCGGCTGGAGAAAGAGCTCGGCAAGCACTGACCGCGCCAGGTCCGGCGCATGtgtataatgtacatttaatttattattcatgtttttatttgggGAATCGTCAAAACGTGCCGAGGAGGGAAATCAAATTAAACTAGCATGGAAAAATTGGGTTATCATGCAATCTTCCCCTTcgctatttatttcttttgttttcaaaaaacgATCTActactgccatttttttttttttatttaaacatttttaaagtctaataaaattgactttttaatcAGTAAAGGATATAATAAAttgatgaaatattatatttaagtttttttgcattaggTCTAATGTGAATTTTGTAGAAAAAGTGCTTAGTTTTTTGTGacaatttttatgtttagttttgaaagaaataaaacattttatttttgctcataataataataaatatgagtacaaatgaaaacaatatagCGTATAATATTATGATACtattaagtaatatatttaatgcatatatgCTTTTTGTGCTCCgattataaattgtataaagaatattattttccttttttaataataataataattattattattattattattattattgttgttattttgaaaaaaagtattaggctttatttattttaatttttttttattattttaattttagggtaAAATATTGCAGTGAAAAACACATATTCCTGACAGGTTTCTTCTAAATGATGAAACTCATTACTGCacatgctttattattattattattattattattattattattattgttattgttatccGCTTCAGTCCTCAATGAGGTTCTGTAAGAAAGAGAGACTTTCTGCTTATGTTTTACATGCAATTcagaatgtatttattgtaacgGTATCAATAAACCCATCaggaaaataa

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220199 lncRNA downstream 26150 2874411 ~ 2983937 (-) True G148889
XR_006247685.1 lncRNA downstream 111437 2895960 ~ 2898650 (-) True LOC122327605
TU220155 lncRNA downstream 250400 2698113 ~ 2759687 (-) True G148860
TU219965 lncRNA downstream 417358 2591572 ~ 2592729 (-) True G148749
XR_006247728.1 lncRNA downstream 446864 2527094 ~ 2563223 (-) True LOC122327855
TU220234 lncRNA upstream 24044 3041452 ~ 3045417 (-) True G148906
TU220258 lncRNA upstream 40602 3058010 ~ 3058631 (-) False LOC122327369
TU220267 lncRNA upstream 85171 3102579 ~ 3102897 (-) True G148927
TU220496 lncRNA upstream 175880 3193288 ~ 3194804 (-) True G149071
TU220500 lncRNA upstream 206740 3224148 ~ 3224527 (-) False dnase1l4.1
XM_043222782.1 mRNA downstream 7292 2999104 ~ 3002795 (-) True rx1
XM_043222944.1 mRNA downstream 16542 2990270 ~ 2993545 (-) True LOC122327522
XM_043222581.1 mRNA downstream 21789 2977651 ~ 2988298 (-) False LOC122327311
XM_043222580.1 mRNA downstream 21789 2977651 ~ 2988298 (-) False LOC122327311
XM_043222579.1 mRNA downstream 21789 2977651 ~ 2988298 (-) True LOC122327311
XM_043222578.1 mRNA upstream 62 3017470 ~ 3034197 (-) True zfr2
XM_043222688.1 mRNA upstream 33992 3051400 ~ 3065177 (-) False LOC122327369
XM_043222687.1 mRNA upstream 33992 3051400 ~ 3063119 (-) True LOC122327369
XM_043222686.1 mRNA upstream 33992 3051400 ~ 3060884 (-) False LOC122327369
XM_043222631.1 mRNA upstream 62521 3079929 ~ 3089456 (-) True ncln
unassigned_transcript_2543 other downstream 129682 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 130452 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 878804 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 879129 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 879391 2130623 ~ 2130696 (-) True trnai-aau_114
XR_006247638.1 other upstream 238601 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 330012 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 370852 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 674092 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 1139084 4156492 ~ 4158981 (-) True G149491

Expression Profile