RNA id: XM_043222697.1


Basic Information

Item Value
RNA id XM_043222697.1
length 1709
RNA type mRNA
GC content 0.52
exon number 4
gene id ccdc51
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3220932 ~ 3223501 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAACATGTCAGCCTCGCGGTTTcgttttaaatctttaaatatccACGCTGTTATTTGTTTTCAATTATTGGTTGGTCGAGTCGGGTGAATTATTTGGGAGTCGGTTCGCTTGAATCGTAAAAAAAGATTCTATCCAAAAGAGCAGCAGCTAGTGCCTGATAGAAATGCGCTCATGCCGCAGGATGACATTTCGGTGAATTAGACATATATGTATTATACTGTAAAGCCTGTAAACATGAGAAGTTGGTGACCCGAGCAGAAACGACGAGAAACGGAGAATCACTGTATGTTTACAGGTTGTATATTTTTCAGGCTCTTCAATGAGGTTCAGAGGGAACGCTGTATTTCCAAGCAGCTATGTCTCCACATGTCTCCACCGACACCAGGGGTCCGGCCCGGTCCAGCGTGGCCTCCACAGAACTTATTGCACCCAGCAGCAAAGTCCGAAAGATGAGCCGAATAAAGTGACCTCCGTTAAAGAGCACACAGCCTCTGCGTTGTCGTACGCAGGAACCCTGGGAAGGCAGTGGGGGCGAAACGCAGTGAAAACCACGACAGTGACCGTCAACTACTGGTGGGAGCGATATGAGGAGTTTGTCGGGCTTAATGAAGTCCGGGATGCTCAGTCCAAGGTCACGGAGGCTGAAAAGGCCTTCATGGTCGCCAGAGGAATCGTCCGGGAAGCTCACGGCAGTCTGGAGGCTCTCCAAGTCCGGCTGAAGGAAGTGAGGGACCGCTTGGACCGCGTTTCTCGTGAAGAAGCGCATTATTTAGAGTTAGCAACACTGGAACATAAGTTACTGCAGGAAGAACGGCGTCTCAGAACCGCCTATGAGAACGCCGAAGAAGGCGAGCGAGAGAAGTTTGCGCTCTTTTCCGCTGGCGTGCGAGAGAGCCACGAGAAAGAAAGGACCAGGGCCGAACGGACCAAAAACTGGTCCATCATCGGTTCGGTTTTGGGCGCCGTCATTGGCGTGATGGGCTCCACTTATATAAACCGTGTACGTTTGCAGGAGCTCAAGAGCCTGCTGCTGGAGGCCCAGAAGGGACCGGTGAGTCTGCAGGAGGCCATCAAGGTCCAAGCCAGCATGCATAAAATGCAACAAGACGAGCTCAGCAATCTCATCGAATCACTCAGGGCGGCTTTAAAAGGCAGCGTAGATGTGAAAGCGGTCAAACCCGCGTTCGTCCCGCCAGCGGTGGCGGCCGCCTCCGTCGTCCCAGCCTCCAGGGCCTCAGAAGAAGCGCTCCGAGAGATCCTCCAGCACAGCCAAAGAGCCCAAGGGCTCATCGAAGGCCTTAAACCGCAGCTGGACCAGCTCGGGGAGAACGTGGGGAAGGTCGAGAACGAGCTGCGAGCCTTCAAGACGACCCTACAGTCACGTCCCGTGGAGAAGCCGGTCATCCAGACCCGAGACACGCAACTCTTTGTGTGCGATACGGAGACCGTCGTTCAAGGCCTCGGCCAGACTGAGAAAAGACTGGAGGCGCAGATTAACAAAACAAGTCAATACAATACAGTCTTGACGTGTGCCGCGTTCGCTGTGACCGTGCCAGTTCTGTACATACTTTTGAGAGGGACTTGAAAAGCATGCAGGCAGTGTGCGCTTGAGGGGCCAATTAATACACCAGAGAATAATATAACTGAAAAGTACAATTATTGTCCAAGGTTGTGAAAGATTGATTAAATATTGTCGGTTCTAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220496 lncRNA downstream 26128 3193288 ~ 3194804 (-) True G149071
TU220267 lncRNA downstream 118035 3102579 ~ 3102897 (-) True G148927
TU220258 lncRNA downstream 162301 3058010 ~ 3058631 (-) False LOC122327369
TU220234 lncRNA downstream 175515 3041452 ~ 3045417 (-) True G148906
XR_006247685.1 lncRNA downstream 322282 2895960 ~ 2898650 (-) True LOC122327605
TU220500 lncRNA upstream 647 3224148 ~ 3224527 (-) False dnase1l4.1
TU220502 lncRNA upstream 10171 3233672 ~ 3235759 (-) True G149074
TU220504 lncRNA upstream 18920 3242421 ~ 3242805 (-) True G149076
TU220509 lncRNA upstream 27748 3251249 ~ 3251471 (-) True G149081
TU220574 lncRNA upstream 126592 3350093 ~ 3353485 (-) True G149111
XM_043222582.1 mRNA downstream 440 3213764 ~ 3220492 (-) True mcm2
XM_043222614.1 mRNA downstream 7941 3196422 ~ 3212991 (-) True podxl2
XM_043223835.1 mRNA downstream 31049 3188034 ~ 3189883 (-) True LOC122328126
XM_043222691.1 mRNA downstream 35459 3181114 ~ 3185473 (-) True LOC122327372
XM_043222679.1 mRNA downstream 43699 3170335 ~ 3177233 (-) False LOC122327365
XM_043222892.1 mRNA upstream 834 3224335 ~ 3232213 (-) False dnase1l4.1
XM_043222893.1 mRNA upstream 834 3224335 ~ 3229242 (-) False dnase1l4.1
XM_043222891.1 mRNA upstream 834 3224335 ~ 3229242 (-) True dnase1l4.1
XM_043222612.1 mRNA upstream 15608 3239109 ~ 3243922 (-) False wu:fc11c11
XM_043222611.1 mRNA upstream 15608 3239109 ~ 3243922 (-) True wu:fc11c11
unassigned_transcript_2543 other downstream 340527 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 341297 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 1089649 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 1089974 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 1090236 2130623 ~ 2130696 (-) True trnai-aau_114
XR_006247638.1 other upstream 32508 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 123919 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 164759 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 467999 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 932991 4156492 ~ 4158981 (-) True G149491

Expression Profile