RNA id: XM_043222711.1


Basic Information

Item Value
RNA id XM_043222711.1
length 2762
RNA type mRNA
GC content 0.43
exon number 13
gene id pcyt2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6272453 ~ 6282129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCACTTCCTGAGGGGGCGGGGCATCGCGAGGACGCGCGCTGTTTGCGTGCTGTTTGCGTGCTGCGTCATCACCGACGTTCTCCGGGCTTCTGGAAGGACGTGGGGCCGCCGCCGGTGTCGTTCACGTCCACACGAGCGTCCCGGCCGTCCGTAGCGTCTGCTCGGGCATTTCACACGCTTTAAAACATGATCAGGAACGGAAGCCACGCGgcggcggaggaggaggagcaggcCGAACCGAGCTCCTCGAGCCGCAGCCCAGAGAAGAGGAAGCGGGTGATCCGGGTGTGGTGTGACGGCTGCTATGACATGGTGCACTACGGTCACGCTAACCAGTTACGACAGGCCAAAGCGATGGGAGATTACCTCGTGGTAGGCGTACACACGGACGAGGAAATAGCCAAGCACAAGGGTCCCCCGGTCTTCACGCAGGCCGAGCGGTATAAAATGATACGGGCCACAAAGTGGGTGGATGAGATCGTTGAGGGGGCTCCGTATGTTTCTACGCTGGAGACGCTGGACAAGTACAACTGTGATTTCTGCGTGCACGGAGATGACATCACACTGACCGTGGATGGAAAAGATACATATGACGAAGTGAAGAGAATGGGCCGATACAGGGAATGTAAACGCACGCAGGGGGTGTCTACGACGGATCTAGTGGGTCGTATGCTCTTGTTAACGAAATCACATCACAGCAACGTTGATAATGCGGCTTACCAGCTACACACAGATAACTTTGGGAAGGGTCCTAAAGGGCACAGCCCTTGGACTGGCGTCTCTCAGTTCCTGCAGACGTCTCAGAAGATCATCCAGTTCGCCTCAGGGAAAGAACCACAGCCCGGAGACACAATTATTTATGTAGCCGGAGCTTTCGACCTCTTCCATATCGGCCACGTGGATTTCCTCGAGACCGTTCACAAACAAGCAGAGAAACCTTACGTCATTGTCGGACTGCACTTTGACCAGGAAGTAAACCGCTATAAAGGAAAGAACTACCCCATCATGAATATTCACGAGAGAACTTTGAGTGTGCTGGCTTGCAGGTACGTGTCAGAGGTTGTGATCGGGGCTCCGTACGCAGTAGGAAAAGATCTTCTGGATCACTTTAAGGTGGACTTGGTGTGTCATGGGAAGACCGAAGTGTTTTCTGACACAGATGGGACAGACCCTTACGCCGAGCCAAAGAAGAGAGGTATTTTTCGCATCCTGGACAGCGGCAACAATCTGACCACCGACGACATCGTGCAGAGAATCATCGAGAACAGGTTGCAGTTTGAGGCCAGGAATCAGAAGAAGGAAGCTAAAGAGATGGCCGTGATTGAAGCTTTGAAGCACAAAGAGGATTCGCTGAAGACCGACGCGGCTCTAACGAATAATTAACCGAACTGTCCAAACCGAACGAATCAAGGGCTTTGTCGTAGAACCAAAATTTCCCCCGGACTGTAATACAAACAAAATGCCTGAGCTGAGGCTGCTTTTAACaatggacttttttttaataccgtACGACTCTTGTTTGACGACGAAAGCACTTTGTTGTGCGTGGAGAGTTTTTATGATACCTATTAAATGGGTTGGAAGACATTCTCTGGATGGGAGGAACACTGAAAAACATTCAGCAGCTACTTTTGCATTGTGTGTGGAGGTCATGGGAGGATTGTGTCATTTCAGTGGTTTTGAAGTTTTGTAGTTGAGCAGAGAAACGCTCTGTGAAGAAACGCTTGATGTCGGCTGCATGCGTACTAGCGGTTAGTATGCATGTAAGCTTATTCGGATTTTATGCTGGATATATGGAAATATATCCAGGTCACATTTAACCCCAAAAtcaagagataaaaaaaaaatatatatatatatatattgttttcgAGAAGAAAGACTGTTGaggcatttttttgcattgtgatattaattttattactgaATTTTCATCCATATTCTCATCATCCTAATGTTTCTGGACATTTATcctcttattttatattttatttaaatttttttttttatttcataaggTTCTCATTTGCAGTAGTAATTCTTATTAGATTTTCTTTATAgtaattttaactaaatatcttgtctttttttttttttttttttttttttttttttttttattattgatcttTTTTCCATTTCGACACATGcgcttatttataaaaatagtaTCACAATGGcaaagaaatttaaataaaaaaataaaaaataaaaaattcatccTGGCCATTTCTAACTCAACTATTGGTTCATACGCTGTCCATAGTCACACATCTGCCATTTTACCGTTTTACcacttttattttcactttcttATCTTTGTTTGTTGTGACATGATCAAAGTCACAGCCAAAGACCTCAGGTTAGATGTCAGTTTGACGTCACGCTTTTACTCATTTTAACGTGCACCAAATAATCTCTACAAAGTCTCAAAGTTGATTGGTAAAAGTCAAACTTGCTTTTTTCATATGTacttttatcttgttttatgcGATTTGTTGtccgtttttgtttttaatgaatgtcgAAGCACCTTGGGATTGCAGCATGTTTTTACTGTGCGTTAAGGGTGAATtgctgtgggggaaaaaaacactaatttaatgtttttacgtTGCATAAATGTTGAGTGACCAATTCTGAATGTGGAGTTAATGTCTTCAGACAATCTATAATTTATCATCCCATGCATCATATGCCGAAAATCATCAAAACGCATCAATTAATTGCAAATTCAGTTGCAATAAAAAGTACGAAAGCA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00967 PCYT2; ethanolamine-phosphate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222404 lncRNA downstream 88552 6157497 ~ 6183901 (-) True G150273
TU222402 lncRNA downstream 117437 6144878 ~ 6155016 (-) True G150271
TU222349 lncRNA downstream 417286 5854785 ~ 5855167 (-) True G150234
TU222348 lncRNA downstream 418050 5854201 ~ 5854403 (-) True G150233
TU222347 lncRNA downstream 420563 5851285 ~ 5851890 (-) True G150232
XR_006247652.1 lncRNA upstream 31056 6313175 ~ 6314227 (-) True LOC122327580
TU222325 lncRNA upstream 62020 6344139 ~ 6345150 (-) True G150216
TU222482 lncRNA upstream 95568 6377687 ~ 6381972 (-) True G150322
TU222491 lncRNA upstream 102037 6384156 ~ 6386767 (-) True G150325
TU222664 lncRNA upstream 233446 6515565 ~ 6659352 (-) False G150440
XM_043222748.1 mRNA downstream 1096 6238357 ~ 6271357 (-) False gnav1
XM_043222747.1 mRNA downstream 1102 6238357 ~ 6271351 (-) True gnav1
XM_043222628.1 mRNA downstream 41279 6221862 ~ 6231174 (-) True slc26a11
XM_043222946.1 mRNA downstream 55839 6190074 ~ 6216614 (-) True tspan7b
XM_043223018.1 mRNA downstream 84726 6185969 ~ 6187727 (-) True mid1ip1b
XM_043223005.1 mRNA upstream 938 6283057 ~ 6285580 (-) False gcga
XM_043222600.1 mRNA upstream 4308 6286427 ~ 6301503 (-) False dpp4
XM_043222601.1 mRNA upstream 4308 6286427 ~ 6301503 (-) False dpp4
XM_043222599.1 mRNA upstream 4308 6286427 ~ 6301503 (-) True dpp4
XM_043222984.1 mRNA upstream 24302 6306421 ~ 6308311 (-) True mettl21a
TU222410 other downstream 35588 6236252 ~ 6236865 (-) True G150276
TU222356 other downstream 279730 5989500 ~ 5992723 (-) True use1
TU222175 other downstream 411136 5859347 ~ 5861317 (-) False timm13
XR_006247631.1 other downstream 620295 5644413 ~ 5652158 (-) False nisch
TU222186 other downstream 730394 5538561 ~ 5542059 (-) False bloc1s1
TU222327 other upstream 337 6282456 ~ 6285577 (-) True gcga
TU222663 other upstream 335456 6617575 ~ 6659352 (-) True G150440
TU222738 other upstream 572651 6854770 ~ 6856863 (-) False nab1a
TU222739 other upstream 572651 6854770 ~ 6889657 (-) False nab1a
TU222740 other upstream 572651 6854770 ~ 6881469 (-) False nab1a

Expression Profile