RNA id: XM_043222719.1


Basic Information

Item Value
RNA id XM_043222719.1
length 2855
RNA type mRNA
GC content 0.45
exon number 10
gene id cers5
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3255396 ~ 3273051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACATGTGACcgacaaacaaatataaaatatattatctgACAAAGTTGACTTGACGGAAATGAAGAAGACCTGAATTTGTAGGCATTTCATCagatacaaaacaaacataaaaataaagcttttattcaagagttatatttaaatatttttatatatggtTTATAACACAAAATATGGGGGTGACATCTTacggtgttaaaaaaaatcgcAATTTCATTGACAAAGTAAATAGTTTGTAGcagccattttgtttttgttttttctgttgacGCTAGATGCTAACGGAACTGCTTCAGGAGAATAAAATGATcagaatatttcaaataattgcattagattttaataaatgtcttgtGGCCCTACAAAAAGCATATGGACACAACTTCGAAACCtttataaacttttaaataaataaataaaaacactttactccaaaaaaacatggttaattTTTTAAGCGAAGCTTGATGTCAGTcagtaaatttatattaaaaccgCTGTTGTTCATAGTATGTCCACAACGGGGCGCCATATAACAATCGGTGAAGATGTCGTTACTATCTGATGACAGGTGTGATTCATTCGAGCGAATCGTTCGCGCGGCTAACTAAAAGAACCGATTCGAAGAACCGATTCATTTGAACGAACTATTACTATAAACAGAGTAATTTTCGCTCAAAATAGTTAGCTGGCGATGCGTGGAGCTTAACCGTTTCTAGTGTCTCAGAATCGCTCTGCCcaaaccataataataattaattcgGAGATAAAAAATCCAACACCGCGCTTACCGGCTTCAGAAAACATACCTAAACCACAACGCCCTAAAACCAACCGGAGCAGTAAATACCTCTACcctatgcattatgcattatgaaCGAGCATCTTGTGTCGTAACGTGTTGTGAGGACTACGTAGTGCGCACACTTCCTCATCACGGGTGTGGAAACACCTTCAACACGTCCACACTCATCCACACGCgcgagaggaagagagagagagagagagagagggagagagagagagggagaaaggggGCGGCGAATCGcgtattttctttctttgcgtcctctcctctctctgaaTCTCTGGTTTTCCTCCTAACATGGCTGCGCTCTCAGCCTGGTTCTGGAACGAGCGCTTCTGGCTTCCGCACAATGTCACTTGGGCGGATCTGGCCGACCCAGCGCCCGGGGTGGAGTACCCCAAAGCCGGCCACTTGCTCTCCGCGCTGCCGCTGGCCTTGGGGATCTTCGCGGTGCGGATCGTCTTCGAGAGGTGTATCGCGGGTCCATGTGCCTCCATCCTTCAGATCCAGACAGAGTTGAGTCGGAGAGCTCAGCCCaacgccgtcctggagaaagtGTTTACATCCATCACAAAGTGTCCAGACTCGAGGCACTTAGAGGGTCTTTCTAAGCAGCTGGACTGGGATGTGAGGAAGGTCCAGAGATGGTTTCGACACCGGCGGAACCAGGACAAACCCAGCACAAGAACCAAGTTCTGCGAAAGCATGTGGAGGTTTACATTCTACCTGTGTATATTTACGTATGGGATCCGTTTCCTGTGGCAGtCGCCCTGGATGTGGGATACAAGACACTGCTGGTACAATTACCCTTATCAGGTGCTGACCTCAGgcctgtattattattatataacagaaCTGGCCTTCTACTGGTCGCTCATGTTCTCACAGTTCACGGACATCAAAAGAAAGGATTTCCTCATCATGTTCGTGCATCACCTGGCCACCGTCAGCCTGATCAGTTTCTCGTATGTAAATAACATGCTGCGCGTGGGCAGCCTGGTCATGTGTGTTCACGACGCCTCGGACTTCCTGCTGGAGGCCGTAAAGTTAGCAAACTACGCCAAATACCAGCGTTTATGTGACTTCTTGTTCGTGGTGTTCGGGATGATCTTCTTTGGGACGAGACTGATCATTTACCCCTTCTGGATCCTGAACACGACGCTCTTCGAGAGCTGGGACATCATTGGGCCGTACCCGTCCTGGTGGCTCTTCAACGTTCTGCTGCTGGTCCTGCAGGTTCTGCACATCATCTGGTCCTACCTCATCGCCCGCATCGCCTTCAAAGCCATCATGAGAGGAAAGGTGTCCAAAGATGATCGCAGCGATATCGAAAGCAGCTCGGAGGAAGAAACCGACACGACACCCAAAGAGCGTCTCAAGGCGGCTTCATCCCGAGGAGAAAACGGCACCAACGGCCATTTTGGCTCCAAACCTTGGAGCCAGAACCACAACAACTGGTGACGCTCCCTTCCGCTTTGGCCTTGCGCACAAAGAACTCGTGTCCCAGAAATATCGCGACGGGACCACGTACCTCACTCCAACACCAAAAACAGCGAAACACCAACGAAATCGCCCCGCTGTGGGACTTTCGACACTCGACGGCGGAGTTTGGGGCGTCATTCCGGTGACGATGGGACAGTAATGACAATATGGCCACTACGAGAAGCTTGTGAAAGAGAAAACGATTAAATTAGTGATATTTGCATTCCCTCGTTTCCTTGTCTCGGGAGCTGAGAAGACGTTTCTTCTCTGCGcttcacatttttactgaagTCAGGGAAGAAGATCCTCTTCAGATTTTAATGGTCAGATGTACTTGAGTTTCGTTATTGCGGTTGCTTTTCTTTTCGTTCtcgttgtttgtttttggttactgatgtgtttgtaatttgtttcctgtgctgttttttcattccaccttttttatttttggagacCAAATaaggttattaaaatgaaagctgGGCCTTTGTCTTGTAATGAGATGCTTTTTGATTGAGATCGGGGTAGATTCAATTAAATAATGGTgtggcgaaataaaaca

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220509 lncRNA downstream 3925 3251249 ~ 3251471 (-) True G149081
TU220504 lncRNA downstream 12591 3242421 ~ 3242805 (-) True G149076
TU220502 lncRNA downstream 19637 3233672 ~ 3235759 (-) True G149074
TU220500 lncRNA downstream 30869 3224148 ~ 3224527 (-) False dnase1l4.1
TU220496 lncRNA downstream 60592 3193288 ~ 3194804 (-) True G149071
TU220574 lncRNA upstream 77051 3350093 ~ 3353485 (-) True G149111
TU220577 lncRNA upstream 77412 3350454 ~ 3351332 (-) False G149114
TU220578 lncRNA upstream 77656 3350698 ~ 3351474 (-) True G149114
TU220575 lncRNA upstream 95108 3368150 ~ 3372307 (-) True G149112
TU220582 lncRNA upstream 104227 3377269 ~ 3449101 (-) True G149117
XM_043222942.1 mRNA downstream 1681 3252113 ~ 3253715 (-) True LOC122327520
XM_043222612.1 mRNA downstream 11474 3239109 ~ 3243922 (-) False wu:fc11c11
XM_043222611.1 mRNA downstream 11474 3239109 ~ 3243922 (-) True wu:fc11c11
XM_043222892.1 mRNA downstream 23183 3224335 ~ 3232213 (-) False dnase1l4.1
XM_043222803.1 mRNA upstream 93 3273135 ~ 3277399 (-) True LOC122327437
XM_043222656.1 mRNA upstream 7567 3280609 ~ 3286516 (-) False LOC122327353
XM_043222655.1 mRNA upstream 7567 3280609 ~ 3286516 (-) True LOC122327353
XM_043222994.1 mRNA upstream 17468 3290510 ~ 3305204 (-) True LOC122327550
XM_043222759.1 mRNA upstream 36221 3309263 ~ 3315077 (-) False LOC122327410
unassigned_transcript_2543 other downstream 374991 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 375761 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 1124113 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 1124438 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 1124700 2130623 ~ 2130696 (-) True trnai-aau_114
XR_006247635.1 other upstream 74378 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 115218 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 418458 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 883450 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 1156728 4429770 ~ 4433500 (-) False LOC122327456

Expression Profile