RNA id: XM_043222744.1


Basic Information

Item Value
RNA id XM_043222744.1
length 4069
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC122327402
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3736141 ~ 3741922 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGTTtcgcatttgttaacactgttgGTGTAGGGTGTATTTCCAATACGATCGAGAGTTAAGGTTCACGTATTAAATCTGTGTTCAATTCTCACGATGAATTTGCGCCAATGTTTTCactaattgttatttattgtataattgtatctCTCCTttgactttttgtgtttgtctgacaGGAATCGAGCCCTTCTTATGGCTGAAATCCTGCTTGAATTTGGCAACCACAAACACCTTTCGTTCCACAGACggttttttttgcactcttcTCTTTAATTTGTTAtaacttttgtgtttttgttcagtttttgaGCTTTCATTTATGAAGGAAACGCCTACTTGACTACATCCAATCGTTTCGCGGTACAAAAAAGACCCTATTTTAAGTATGTCTCAAGACGGAAATAAAATCGGTCGCAAACTTCCAGTTCACTCAAACTTTAATCGAATCGACTATAACTCAAAGTCTTACGTAAAAGCAATACATTAAGAATTACACCCGTTTTGTAGTAGCTTGATGCTCGTTGTACCTCTAATTATCTTTTATCATGTAgtctatttttgtaaaaattatagATAGGTGGTGTTTCTGGTGTAGAACAAAACTTTGTTTATCGTAATTTAGATGTGACATCCATACAAGAAACAATCTAAGGAATAACGCATTGCTGGTCGGCGCCACCTAGCATGCTGGCGTGAATTAGCATTCGTTTCGCGCTCGGTTCGTTTGCGTTTCACCTCGCTTTTTCGCATCGCGCTAAGCGTGGAAAGGCCTCAACTGTGGACAGAGCTTAAGCAACGTTAGCCAGCGCCACAGAGGACACTATCAGCGACACTATGCCTAATTTAATTTGTCAGCGCAAGCTAAAGCTAATGTTAGAACAGCTAACGCTTAACTTACCGAAATAAAGTGCTCACTACACAGTCACTGTTTTCCCAATTTGTTCTGCAGAAAACCTGGTTCGATCTGTCCAGTAGATAAACAGCTTCTGCTAGATGTTTGtggtctctctgtgtgtgtgtgtgtgtgtagtagtttttattttctctcctaGCATGTTAAACTGCCTGTGCGCACTGATAGTAAAGTATTTTATGCTGTGCAAGTTAGAATTACCACAAAAGTCAAGATAAGAGCTCTGTATGacttttaatagctttttatgtttgcatCATATGAGAAGCATACATCAGAAGCAACATCAGCGTGATTGCATATGCGATACTGATATTATGCAACAGTTCAACAGACAAGAAGATataaaaagttatgttttaGGCACAATGTTGTCTGTTTTTGCACAGTGGATATTATATAAATCAGACAGATGTGATGTGTGACTGaattaatctgtatttttgaaaaagtcATGTCAATGATTTAATGACCAATCATTAAACACATGAATCAGTAAACCTTTTGAACAAATCGTTTGAGCGAATTATTCAGTGACGACCTGCCTCCACACACTGGATACTTAGTTTTGTAaagtatcattattttaatttttttcaatattctcCAAGTCGTGTGCAAAACATCAATCTCaaagcattatttatgcatttatgcaagATCGGCCAAGATTATCATGATGATAATGGAGACGGAAACTGTGACGACCAGATAAACATCACAGTTCAGTTCAGAGTGTTTCCAGACCTTTCAAAGATCACTGTTGTGGGGTTTTGAGTGAAACCGTGTTTCTCAAATTAGTTTTGTTGGGTTTGTGGCATCTGGATGGTGAGTCTGAAACTTGTTTTTATGAGATTAACGTTCACTGTTATGCTCATATCGCCATAACATTAATCTGAGAACAACTTTGAATTGACGTTATTCGGGGTAATCGATTCAATCGCGAACAACGTTAATGTTAGTTGTTAGTTCAATGTAAAACTTAAATCTTTGCTTGCATCTTTGTCTTTGTACGGCTGTAGAATATTATTCActgcacttttaaataattgtaagtattttagtgaaaaaacaagacttttaaAGCTTTTCTGTGAACAAAATGTTCTTCAGGAGTGTTTGGTGATGATGAAGTGAGGTCAGTGTCTGTGAAGGAGGGACAATCAGTCACTCTGAACTCTGATCTTACTGAAATGAAGGATGATGATCTGATTCAGTGGAGATTTTATGATACTTTATTGACTGAAATCAGTAAACAGAGAGGCAGATTCGTTGTATATGACGACGTTCTTgacgggagattcagagacagactgaagctggacaatcaaaccggatctctgaccatcatgaacaccaCAACTGAAGATACTGGACATTATAAACTACAGATCAACAGTGTCATCAAGTATATTATTCTTACTGTCTATGGTGTACTGAAGTCACTGTTAGTGaaggagggagattcagtcactaTAAACTCTGGTCTTACTGAAATGACGGACAATGATGTGATTCagtggaggtttttttttaatgatttcacTTTAATCGCTGAAGTAGACGTCAAAGCCAACAGCATGACTGTatatgatgatgttcttgacgggagattcagagacagactgaagctggacgaTCAAaccggatctctgaccatcacgaacatcagaaacacagactctggactttatgAACTTTACAGCGGATATgtgacttttgttttctttctcagtgtCCATAATGAGATAtcagtgatggagggagattcagtcactctcaACTCTAAACTGACTAACAAAGTGGGTGATGATGAGATTCAGTGGTTtgtaaatgaaagcattttatgTGCTGAAAACAATAAATTGGCCGGCAGATTCACTGTGtatgatgatgttcttgacgggagattcagagacagactgaagctgaaGAAACGAaccggatctctgaccatcatgaacatcaCAATGCAACATGCCGGATATTATAAACGACAGACCAACAAACTGACTGAGAGTTATAGACTCATTGTCAGTGCTTCCCTGCCTGTTCCTGTCATCAGCACAGACTGTccctcatcatcctcatcaccctcatcatcatcaggaTCTCATCTAAatcccatcagaaaccagactcaACATCTGGAGCACACGTGTTCAGACTCTGAACACTGCTGTGGTTTTACTGAAGCTGTGATCCGATTGGTCCTCTCCGCTCTGGTGGGCGTGGCTACTGTCCTTCTTCTGGTTTATGACATCAGATCCAGAAGAGCTTGACGAGATcaaacacatattcacacaccAGGTACTTcaccatttatatattttctcattaaactGTTTAGTTCagtatttattagcattttaatttatttataatggttTTGTATATTCACATACTggtacatttgtttattttaggtgATTCTTTTGCACTCTTGAAGATGATTTGAGAACAAACGGCAATGCGTTCTCtcatttaccatttaaaaaaatgtgagagTTTGACATAATACATGCTTATGATTAGCAAACATTTCATTGCTTATTGTAGATTATCATGTCTTCAGTCTATGTTTCCCTTTCTTGGTTTTtgaggactcttattttgaagtgtctgtcccccattgtttctgtgttccCTTCTTCCTTTGCTCACCTGGTTAGTTTCTTTATTAACGATTaactcctcccccttgttacCTCGTTATCGTGTCTATATAAAATCCATTCACTTCCTGCTCAATCTGCATTTAGCACTCTCCCAGCGCTAGAGGCCTTACCATGCTGTGTTGTGGGCCATTTGCCATTTGCCATTTGCCATTTGCCATTTGCCATTTGCCATTTGCCATTTGCCATTTGCCATTTGCATGTTCTTTCCTTTATCAATAAATGAGCTGGTCCTAGAGCTCTATGCAGCTCTAGGCTGAAACTCTGGTTGTTTGGGGCAAACAAgctccatttttttatttaacttttagatACACAATTCCCTGTTGGGGCTACACTTTGTTCCACCAACAACTCCACAACGTTTCTActgataacatttttaaaaagtttagcaATTGCAGATGAATTGCAATTTCAGAAGGAAACGTTCTACTAATGTTATGCAAGAATGCTAACTTTGAGAGAACCTTTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221033 lncRNA downstream 14954 3720171 ~ 3721187 (-) True G149413
TU221029 lncRNA downstream 43220 3692157 ~ 3692921 (-) True G149411
TU220622 lncRNA downstream 89916 3645900 ~ 3646225 (-) False LOC122328127
TU220608 lncRNA downstream 149292 3586059 ~ 3586849 (-) True G149136
XR_006247675.1 lncRNA downstream 157412 3576434 ~ 3578729 (-) True LOC122327595
TU221059 lncRNA upstream 87553 3828575 ~ 3829523 (-) True G149435
TU221065 lncRNA upstream 137757 3878779 ~ 3879910 (-) True G149441
TU221072 lncRNA upstream 187664 3928686 ~ 3929766 (-) True G149447
TU221099 lncRNA upstream 233141 3974163 ~ 4021597 (-) True G149460
TU221084 lncRNA upstream 234909 3975931 ~ 4004645 (-) False LOC122327411
XM_043222665.1 mRNA downstream 151 3730511 ~ 3735990 (-) True LOC122327357
XM_043223837.1 mRNA downstream 84132 3644927 ~ 3652009 (-) True LOC122328127
XM_043222982.1 mRNA downstream 176327 3556132 ~ 3559814 (-) True LOC122327542
XM_043222855.1 mRNA downstream 303214 3424435 ~ 3432927 (-) True LOC122327463
XM_043222639.1 mRNA downstream 334739 3378322 ~ 3401402 (-) True LOC122327341
XM_043223841.1 mRNA upstream 1225 3742247 ~ 3744520 (-) True LOC122328131
XM_043223842.1 mRNA upstream 3524 3744546 ~ 3747804 (-) True LOC122328132
XM_043222991.1 mRNA upstream 143491 3884513 ~ 3887580 (-) True LOC122327546
XM_043223852.1 mRNA upstream 155961 3896983 ~ 3898464 (-) True LOC122328145
XM_043222805.1 mRNA upstream 162909 3903931 ~ 3905997 (-) True LOC122327439
TU220553 other downstream 321430 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 386969 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 463090 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 855736 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 856506 2879564 ~ 2879635 (-) True trnad-guc_18
TU221146 other upstream 415470 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 688748 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 688748 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 688773 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 688779 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile