RNA id: XM_043222748.1


Basic Information

Item Value
RNA id XM_043222748.1
length 2232
RNA type mRNA
GC content 0.49
exon number 8
gene id gnav1
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6238357 ~ 6271357 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGACAGGTAGTGCATTAGGAGTGTTTGCGTGAGACCTCAGTGAACACAACGATCCGAGTGCGGAGCCGGACGAAATTAACCGGGAACGGGagattttgaaacttttttttttctttctctttcctcctgTGCGATCGGGACCATCccaacctctctctctctctctctctctctctctctctctctctctctctctctcagatttGGGATCAGATCTTTCCAAAGACACACGCGCAATTGGCGTCGGTGTCATTTTACGCGTTAACCGGAGGGACCTTGGATAAGAGCGCGGGGGGGAGAGAGAACTCGCCGGGATGTTTTTACGCAACTTTGAACGTTCCTCTAAAGTTCAGTCCGTGATGTTGGGATTTCTGCTGGGTCTCTAGCTATGAGCTCTGGATATGGGTCTGTGTCTGGGCTCAGAGGTGACAGAGGAGGGAAAGAAGGCGAAGATTCACAGCTCGCAGATTGACAGAGACCTGTACGAGTACGCCAAGACAGAGATGAACGTGGTGAAGATCCTCATGCTGGGCGCTGCAGAAAGTGGGAAAAGTACGCTGGTCAAACAGATGAAGATTATCCACAGTCATGGATTCACCAAGCAAGAGCTAGCCAGCTTTAAGcCTGCAGTGCTGGATAACCTCCTGACCTCTATGAAGTTTGTCCTCCACGGAATGGGCGTCCTTCGCATTAATCTCTCTAACAGCAAGAACAAGGTCCACGCTCACTCCGTTCTCTCGTGCGGACGCTGCTTCGACGAAGACCAGATGCTGTTCCCGTTCATAGGCCACGCCCTCTGCTGCTTGTGGGCGGATCAGGGGGTGCGGTCAGCAGCGGCGCGAGGATACGAGTATGAACTCAATGACTCCGCCCTATATTTTTTCGAGAACATGGGCAGGATCATCGACCCCGATTACATGCCGACAGAAACGGACGTTTTACgagtccgactgagaaccacaGGTGTGATCGAGACGCAGTTCAAAGTCAAGCACCTGGTCTTCAGAATGTATGACGTCGGGGGCCAGAGGACGGAGAGGAGGAAGTGGATCAGCTGTTTCGAGGACGTGAGGGCCGTGCTGTTCGTCGTCTCTCTGAGTGGATACGACATGACGTTAGTAGAAGATCCGTCTATGataTTATTCATGAACAAGATCGATCTTTTCCAAGAGAAGATTCTCCACTCCGGGCGTCACCTGCGGCATTACCTTCCTCAGTTCAGAGGAGCCGACTGTGACGTGGACGCCGCCGCCCGGTTCCTCGCCTCCATGTTCGTATCCCTCAACACAACCCCCAGCAAGCTCATCTACCACCACTTCACCACGGCCACGGACACCTCCAACGTGCAGGTGGTCTTCCAGGTCGTCATGGACACCATCATCAAGGAGAACCTGGAGGCCGTGTCTCTGCTCTGAGAGCCGTTCCTCTTTTAAAAACTCAAAGGCTCGCGGATGAGCCCTTCACGATGCTGGTGGTATTTATTGAAAGCGATGCTCTGACTCGGGATGCGCGCTTTTCCCCCGAAGCGATAAATGCCGGTTTATTTTCTTCTcacagattgaaaaaaaaaaagaccaagtGTCTGATAACAACGGCGTAATCGACACGTATGAGTTGTGGAAGTGTATAATGTGGATTTGAAGGGTATATTATGCTGTCCTTCGAGTGGTCGAGTTGCTCGTCCAAGCATCCAATAATTTTCCACCTGACATCCCTCACTTCCTGTGTGTACGTTATACCATGGTTAATCATCACTTATAAAATAACCTTTTCCTCCTGTGTAAATCTTTGTCCAACATTCAGAGATTGAACACCCTGTCAGGGTCCAGAGTGttgtttttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatttgtgtgtgctttGACTTGTTTGGCGATCCAGCACTTTTATAGTCGTTGAGTCTCGGCGATTCAATCTGAGGTGAGCtgaacgcgcacacacacacacacacacacacacacacacacacacacacacatctacatgAAGCATCATGGCACCTGCAGCAAACcgtaaatgcatttgaaataatgtCACTTTATTCAGTTGCTGTGCATTTTGGCTATTTAGATGCTGTACGTCGTGCCACTTTTCACGCAACTCTTTCGTAAATGCCAAAAGAAAACCGGCCACTGTGAATAGAAACGTCATTAAAAACCAACATTGATCTTT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222404 lncRNA downstream 54456 6157497 ~ 6183901 (-) True G150273
TU222402 lncRNA downstream 83341 6144878 ~ 6155016 (-) True G150271
TU222349 lncRNA downstream 383190 5854785 ~ 5855167 (-) True G150234
TU222348 lncRNA downstream 383954 5854201 ~ 5854403 (-) True G150233
TU222347 lncRNA downstream 386467 5851285 ~ 5851890 (-) True G150232
XR_006247652.1 lncRNA upstream 41818 6313175 ~ 6314227 (-) True LOC122327580
TU222325 lncRNA upstream 72782 6344139 ~ 6345150 (-) True G150216
TU222482 lncRNA upstream 106330 6377687 ~ 6381972 (-) True G150322
TU222491 lncRNA upstream 112799 6384156 ~ 6386767 (-) True G150325
TU222664 lncRNA upstream 244208 6515565 ~ 6659352 (-) False G150440
XM_043222628.1 mRNA downstream 7183 6221862 ~ 6231174 (-) True slc26a11
XM_043222946.1 mRNA downstream 21743 6190074 ~ 6216614 (-) True tspan7b
XM_043223018.1 mRNA downstream 50630 6185969 ~ 6187727 (-) True mid1ip1b
XM_043223879.1 mRNA downstream 140534 6096110 ~ 6097823 (-) True LOC122328173
XM_043222769.1 mRNA downstream 221548 6011435 ~ 6016809 (-) True atp6ap2
XM_043222712.1 mRNA upstream 1096 6272453 ~ 6282129 (-) False pcyt2
XM_043222711.1 mRNA upstream 1096 6272453 ~ 6282119 (-) True pcyt2
XM_043223005.1 mRNA upstream 11700 6283057 ~ 6285580 (-) False gcga
XM_043222600.1 mRNA upstream 15070 6286427 ~ 6301503 (-) False dpp4
XM_043222601.1 mRNA upstream 15070 6286427 ~ 6301503 (-) False dpp4
TU222410 other downstream 1492 6236252 ~ 6236865 (-) True G150276
TU222356 other downstream 245634 5989500 ~ 5992723 (-) True use1
TU222175 other downstream 377040 5859347 ~ 5861317 (-) False timm13
XR_006247631.1 other downstream 586199 5644413 ~ 5652158 (-) False nisch
XR_006247648.1 other downstream 696277 5538556 ~ 5542080 (-) True bloc1s1
TU222327 other upstream 11099 6282456 ~ 6285577 (-) True gcga
TU222663 other upstream 346218 6617575 ~ 6659352 (-) True G150440
TU222738 other upstream 583413 6854770 ~ 6856863 (-) False nab1a
TU222739 other upstream 583413 6854770 ~ 6889657 (-) False nab1a
TU222740 other upstream 583413 6854770 ~ 6881469 (-) False nab1a

Expression Profile