RNA id: XM_043222756.1


Basic Information

Item Value
RNA id XM_043222756.1
length 1574
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122327408
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3942128 ~ 3951104 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCAAGCAAACGCACATGCTCTAAATTCCAGTCTACCTACCAAACTAGTTTACCCTACAGATCAAACAACATTTCTGATAAAAGCCAAACCCGCAGCAGGTTTCGGTTTGACTCGAGCTGAACTTCAGTAAAGCCGGTACTGTGAGGCATCTAGCAATTGTATCAACGGCATATGAAGAGTTTATCTTCAAAAACAGTAACTCggttttttatgcattttcaaaaatcatgttttttacattttaattaattgtggGTATTatcaaaacaacccaactgcGACCGAATTGATATTAATTGGAACAAACAAACTCTTCATATATCTGTTActattatgctttttaaatggttcatgttttatagatatatatctacatatttATATAGACGTTCAGAGTGTTTGTGTCAACAATAGGAGTGTCCAAGATAAACAGCCTCATTAGTTCAGACCTTTCAATGCCGtgacatgctttttttgttctgtttgtgcTGCTGGAGTCTGATCgGCATGTTTGTGGCAGATACAAATGAAATACAGTCCgtgatggagggagattctGTCTCTCTAAACTCTGATCTTACTCAGATACATAATGAGACCATAGCTTGGACATTTGAATCGGAAAAGGCTAATATagctaaaatcagaggaaagaAACAAAACTTCTCCACGTTCGATAATGTTCTTGatgggagattcagagacagactgaagctggatcatcagactggatctctgaccatcatgaacaccagaaccacagactctggactttataAACTACAGATACTCACAGCTAATCTGTACACGAAAATGTTCAATGTTACGGTCTATGCTCGTCTGCCAGTTCCTGTCATCAACAGAGACTGctcttcatcatcatcgtcatcttGTTCGTTGTTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaacatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAACTCTGTCACACGTGTTCAGGATCTCTGGTAGCAGTGATCTCTGTTGTCGTTGGAGCTCTGTTGATTGTCGCTGCAGTCGGGATCTTCTGCTTCTTcaagaaatgtagaaaaacgGACAAAAAAGcagACCAAACTTGTAAAGAAGAAATAACTTATGCTGAAACAACATTcaacaaaagagaaatacaCAAACGGaacttTAAAGAGGAGAATCATGTTGTGTATGCATCTGTCGCCACGAGACAGCAAAAGGAAACTGGTTCATGGGGAAAAACGTATGTTTGAGTCTAAAATGAGAAGTTTTACAGAGGCTTGTCAGAGGACATTTATTCACGCGTCAGCACAGATTCACACTGtagtaatgtttatataatgtatataatgtttatatacatatgttgttatttttgttttactgcagAGCAATAAATAGTTGCATAAGCTTTATTGAGTAAAACTTGTGTATggacatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221072 lncRNA downstream 12362 3928686 ~ 3929766 (-) True G149447
TU221065 lncRNA downstream 62218 3878779 ~ 3879910 (-) True G149441
TU221059 lncRNA downstream 112605 3828575 ~ 3829523 (-) True G149435
TU221033 lncRNA downstream 220941 3720171 ~ 3721187 (-) True G149413
TU221029 lncRNA downstream 249207 3692157 ~ 3692921 (-) True G149411
TU221099 lncRNA upstream 28087 3974163 ~ 4021597 (-) True G149460
TU221084 lncRNA upstream 29855 3975931 ~ 4004645 (-) False LOC122327411
TU221100 lncRNA upstream 41328 3987404 ~ 4016094 (-) True G149461
TU221093 lncRNA upstream 73208 4019284 ~ 4034737 (-) False G149458
TU221091 lncRNA upstream 88384 4034460 ~ 4054869 (-) True G149458
XM_043223853.1 mRNA downstream 25624 3910034 ~ 3916504 (-) True LOC122328146
XM_043222805.1 mRNA downstream 36131 3903931 ~ 3905997 (-) True LOC122327439
XM_043223852.1 mRNA downstream 43664 3896983 ~ 3898464 (-) True LOC122328145
XM_043222991.1 mRNA downstream 54548 3884513 ~ 3887580 (-) True LOC122327546
XM_043223842.1 mRNA downstream 194324 3744546 ~ 3747804 (-) True LOC122328132
XM_043222764.1 mRNA upstream 47624 3993700 ~ 4042369 (-) False LOC122327411
XM_043222762.1 mRNA upstream 50631 3996707 ~ 4042368 (-) False LOC122327411
XM_043222761.1 mRNA upstream 56431 4002507 ~ 4042368 (-) False LOC122327411
XM_043222766.1 mRNA upstream 56431 4002507 ~ 4006652 (-) False LOC122327411
XM_043222765.1 mRNA upstream 56431 4002507 ~ 4006197 (-) True LOC122327411
TU221027 other downstream 63412 3691500 ~ 3878716 (-) True G149410
TU220553 other downstream 527417 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 592956 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 669077 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 1061723 2880334 ~ 2880405 (-) True trnad-guc_19
TU221146 other upstream 210416 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 483694 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 483694 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 483719 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 483725 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile