RNA id: XM_043222759.1


Basic Information

Item Value
RNA id XM_043222759.1
length 2629
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC122327410
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3309263 ~ 3315077 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTCCATGCCGTACGTGGAGCCCTGGACGTGTTGGCTAGTTTCTATTTGGAATATCTCTCTTATAACGGAATGCCCTCCGAAGTGAAGTCCACCTCCAAGAACACTAACTGTCGACGGAACGCACGGAAGTAACCGCCATTTAAGTCGTTCGCGCTGCTATTGCAGATTTTGGAAACGTCAAACTTAAACGAAGCTCTCATAAATCGTcgtgttaatttatttagtcGTTTCAGCGATTCAGATTTCTCTGTTGTTATTGTGAGCATTGCGTTAGCTGTCTGTCGGGAGGGTGTGGTTCACCGACGAGTATTAATAATATCCATGGAAATCTGATTTGGTTGAAATCGTCAACAATATGACTTTCAAGATATTTCTGTCTTTGTTATTAATGCGCGGGGTGTTTGGTTCTGGAGATGATGAAGTTTTATCAGCGATGGAGGAGATTCGGTCACTCTAAACATGAATCTTACCCAAGTACAGGGATTTAATCTGATACAGTGGAGGTTTGGAGGTGAAGGATCCAGCATTGCTAGAACCGATGGAGATGATTTCTCATATACTAATGACGAGATATTCAGAGACAGACTACAGCTGaatcagactggatctctgaccatcaagAACATGAGAACCAAACACTCTGGACTTTATAAACTACAGATCGACCACAGCAGTGGGACATCAAATGCTAAATTttttgttgctgtctatgAGTCTCCATCCGTTATTGATGTTGGTGAAGCTCAAACAAAGAGCGTGTCTGTGAAAGAGGGAGATTCTGTTACTCTTCAGACTGATGTTAATGAACTACATGGAGATGAGCTGATAGTGTGGAGGTTTGGAGGAGAAGGAAAACTCATAGCTAAGAGTGATATAGAGACCAATGGCTTATCTTTAAACACTgatgagagattcagagacagactgcaGCTGAATgatcagactggatctctgaccatcgaGAATATCAAAAACACAGACTCCGGACTTTATACAGTGAAGATCAGCAGCAGCGAACAGATGAGAAACAGGAGATTCATTGTTAATGTCGGTGGTTCAGGTGTGTCTTCCGGTGCTGTAGCAGGGATATCTGTTGCTTTCCTGCTGGCGATTTTAATTGTTGCTATTTACTATCGCTGCAAGATctctaaactaaaaataagacAATTTATACATAGAAAGAAGGATATGATAGTAAAGGAGGGAGAAGACGTCACACTTCACACTGACGCTAATATAGAGGCAGAAGATCGGATCCTGTGGACGTTTGAAGCTCTAGGTGCTCGTATCGCTGAAATCAGAGAAGGTACCAGAGAGACATTTGATGGTGGTGATGGGAGATTCACAGACAGACTGATGCTGGATGAGACTGGATCCCTGACCATCAGAAACATCGAGATTAAACACAGTGGAGTCTATATACTACAGATCAAGAAATGTCACATGATGAGTTGGCTCTCATACAAAAGATTCACAGTTTCAGTCAATGGGAGGACTATATCGGTGATGGAGGAGATGATCTCACTCTAAATTCTGATTTCGATTTAAACAAAGATAAGCAGATAAAGTGGTTGTTTGGAGATCAGTGCATGAGAGCTCCCATAGCTGAGATCAATGTAGAGACCGGTGAGATCTTTCCGTTCGAGGGTAAAGCTGACGGGAGATTCAGaaacagactgaagctggatcatCTGAcgggatctctgaccatcaagAACACCGGACCTGAGCACTCTGGATACTATGAAATCCAGATCGAACACGACAGAGGGACCACATTCAGGATGTTGATGGTTTCTGTCAGTGAGAGGACGATATCGGCGGAGGAGGGAACAAATGTGACTCTAGAGATCGAAACACAGAAGGATGATCAGATTCTGTGGATGTTCGAGCTGAAGAGACTCTCGTGGCTCAAATCAAAGGAGAGACCAGAGAGACACGTGATGTTCCTGATGAGAGATTCACaaacagactgaagctggaagagtctggatctctgaccatcagaaaCATCACAGCTGAACACACCGGAGCCTATAAAGCCCAGATCGTCAGCCGCGGAAGTGTCTCATACAAGAAATTCAAGGTTGTTATGCTTGCGGAGTATGTGCCAGTGAAGAAGGGAGATGCTGTTACGCTACACACTGACTCCAAAACACAGAGAAACGATCAGATacgctggatgtttggagagAAAACTCTCCTCGCTGAAATCAAAGAAGGGAGCGGAGAGATCTCTACATATGATGATGTTCTTAacgggagattcagagacagactgaagctggacgaGCGGACCGGATCACTGACCATCACTAACTTCACGACACAACACACTGGACTCTACACGGTGAAGATCAACAGAAGCGCAGAAACCTACAGAAACAagagttttgatgtttttgccaGAGTTTCAGTGATTTCAGAGGAAAAGGAGGTAAATGAAAATGAAGTGAAGTCTGATGGAAATCATCTGAATGTATGAAGACTGAAATCATCAACacagaaatgaagaaatgagCCGTGTACTCACAAATATCATATAGCTTTTAGAAAATATAGTTTATCACAGCATTTCTCTAACCACTGTATGTGCTgctttatgtaataaataacactaaaataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220509 lncRNA downstream 57792 3251249 ~ 3251471 (-) True G149081
TU220504 lncRNA downstream 66458 3242421 ~ 3242805 (-) True G149076
TU220502 lncRNA downstream 73504 3233672 ~ 3235759 (-) True G149074
TU220500 lncRNA downstream 84736 3224148 ~ 3224527 (-) False dnase1l4.1
TU220496 lncRNA downstream 114459 3193288 ~ 3194804 (-) True G149071
TU220574 lncRNA upstream 35016 3350093 ~ 3353485 (-) True G149111
TU220577 lncRNA upstream 35377 3350454 ~ 3351332 (-) False G149114
TU220578 lncRNA upstream 35621 3350698 ~ 3351474 (-) True G149114
TU220575 lncRNA upstream 53073 3368150 ~ 3372307 (-) True G149112
TU220582 lncRNA upstream 62192 3377269 ~ 3449101 (-) True G149117
XM_043222994.1 mRNA downstream 4059 3290510 ~ 3305204 (-) True LOC122327550
XM_043222656.1 mRNA downstream 22747 3280609 ~ 3286516 (-) False LOC122327353
XM_043222655.1 mRNA downstream 22747 3280609 ~ 3286516 (-) True LOC122327353
XM_043222803.1 mRNA downstream 31864 3273135 ~ 3277399 (-) True LOC122327437
XM_043222719.1 mRNA downstream 36221 3255396 ~ 3273042 (-) True cers5
XM_043222634.1 mRNA upstream 10498 3325575 ~ 3366122 (-) True si:rp71-36a1.1
XM_043222636.1 mRNA upstream 29337 3344414 ~ 3366119 (-) False si:rp71-36a1.1
XM_043222635.1 mRNA upstream 29337 3344414 ~ 3366119 (-) False si:rp71-36a1.1
XM_043222640.1 mRNA upstream 63245 3378322 ~ 3423554 (-) False LOC122327341
XM_043222639.1 mRNA upstream 63245 3378322 ~ 3401402 (-) True LOC122327341
XR_006247638.1 other downstream 36212 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 428858 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 429628 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 1177980 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 1178305 2130887 ~ 2130958 (-) True trnad-guc_17
XR_006247635.1 other upstream 32343 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 73183 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 376423 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 841415 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 1114693 4429770 ~ 4433500 (-) False LOC122327456

Expression Profile