Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043222782.1 |
| length | 1101 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 3 |
| gene id | rx1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056720.1 |
| NCBI id | CM032089.1 |
| chromosome length | 18002998 |
| location | 2999104 ~ 3002795 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0060219 | camera-type eye photoreceptor cell differentiation | biological_process |
| GO:0010842 | retina layer formation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU220199 | lncRNA | downstream | 15167 | 2874411 ~ 2983937 (-) | True | G148889 |
| XR_006247685.1 | lncRNA | downstream | 100454 | 2895960 ~ 2898650 (-) | True | LOC122327605 |
| TU220155 | lncRNA | downstream | 239417 | 2698113 ~ 2759687 (-) | True | G148860 |
| TU219965 | lncRNA | downstream | 406375 | 2591572 ~ 2592729 (-) | True | G148749 |
| XR_006247728.1 | lncRNA | downstream | 435881 | 2527094 ~ 2563223 (-) | True | LOC122327855 |
| TU220234 | lncRNA | upstream | 38657 | 3041452 ~ 3045417 (-) | True | G148906 |
| TU220258 | lncRNA | upstream | 55215 | 3058010 ~ 3058631 (-) | False | LOC122327369 |
| TU220267 | lncRNA | upstream | 99784 | 3102579 ~ 3102897 (-) | True | G148927 |
| TU220496 | lncRNA | upstream | 190493 | 3193288 ~ 3194804 (-) | True | G149071 |
| TU220500 | lncRNA | upstream | 221353 | 3224148 ~ 3224527 (-) | False | dnase1l4.1 |
| XM_043222944.1 | mRNA | downstream | 5559 | 2990270 ~ 2993545 (-) | True | LOC122327522 |
| XM_043222581.1 | mRNA | downstream | 10806 | 2977651 ~ 2988298 (-) | False | LOC122327311 |
| XM_043222580.1 | mRNA | downstream | 10806 | 2977651 ~ 2988298 (-) | False | LOC122327311 |
| XM_043222579.1 | mRNA | downstream | 10806 | 2977651 ~ 2988298 (-) | True | LOC122327311 |
| XM_043222648.1 | mRNA | downstream | 31061 | 2963231 ~ 2968043 (-) | False | LOC122327346 |
| XM_043222683.1 | mRNA | upstream | 7292 | 3010087 ~ 3017408 (-) | False | matk |
| XM_043222682.1 | mRNA | upstream | 7292 | 3010087 ~ 3017408 (-) | True | matk |
| XM_043222681.1 | mRNA | upstream | 7292 | 3010087 ~ 3017316 (-) | False | matk |
| XM_043222680.1 | mRNA | upstream | 7292 | 3010087 ~ 3017316 (-) | False | matk |
| XM_043222578.1 | mRNA | upstream | 14675 | 3017470 ~ 3034197 (-) | True | zfr2 |
| unassigned_transcript_2543 | other | downstream | 118699 | 2880334 ~ 2880405 (-) | True | trnad-guc_19 |
| unassigned_transcript_2542 | other | downstream | 119469 | 2879564 ~ 2879635 (-) | True | trnad-guc_18 |
| unassigned_transcript_2541 | other | downstream | 867821 | 2131213 ~ 2131283 (-) | True | trnag-gcc_103 |
| unassigned_transcript_2540 | other | downstream | 868146 | 2130887 ~ 2130958 (-) | True | trnad-guc_17 |
| unassigned_transcript_2539 | other | downstream | 868408 | 2130623 ~ 2130696 (-) | True | trnai-aau_114 |
| XR_006247638.1 | other | upstream | 253214 | 3256009 ~ 3273051 (-) | False | cers5 |
| XR_006247635.1 | other | upstream | 344625 | 3347420 ~ 3349172 (-) | False | si:rp71-36a1.1 |
| TU220553 | other | upstream | 385465 | 3388260 ~ 3414711 (-) | False | G149102 |
| TU221027 | other | upstream | 688705 | 3691500 ~ 3878716 (-) | True | G149410 |
| TU221146 | other | upstream | 1153697 | 4156492 ~ 4158981 (-) | True | G149491 |
