RNA id: XM_043222783.1



Basic Information


Item Value
RNA id XM_043222783.1
length 1782
RNA type mRNA
GC content 0.47
exon number 6
gene id rdh5
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5533196 ~ 5536573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtgtgtgtgtgtgtgtagtctcTTTTCATGAGGTCGGTCACAAAAAGGTCACGTATAATcttttgaacaaaaacagaaatagagGAAAGCTGCAAAAATGTCATGGTGTCGCATCCTGTCCGGCTCCCCCAAAAAACTTAATTCGATCAGCCTAAAAATAGCGCGAATTGGCGCGATTCTCCTTAAAAAGTTCCTCCCAGCCCAGCTATTTGTGGATCACGCTTGCACAAGCGCGCAAACGAGGGCCCGACGGCAATACAATGAGATTGGAGATTAGAAATCGTGGCCCTGTTTGACAGGATCAGCTTTAGGGATAAATCTGAGACGCGGACCCACTTCAGATCACTCTGCAAACGCGCTCAGGACCTCCAGACCCAAGAAGGGAAAAACAAAAAGCAGTTGTTTACAAAATAACGTCGCAGAATCACTCAGGAGGCAGAAACGATGTACGAGTACTTGAGTAACAGTTGTACGTGCACAAACGTCTTGGGTGCGTTTGTGCTGCTGTGGATTTTGGTGTGGTTCTACCGGGACAACCTGGAGATCACCAAGGTCTCAGAGAAGCATGTTTTTGTGACCGGTTGCGACTCTGGGTTCGGCCACCTACTATGCAAACGTCTGGACAAACGGGGTTTCCGCCTCCTAGCCGGGTGTCTTACAGAAAAGGGCGCAGATGATTTGAAGAGGGCCACAGGACCTTTCCTGAAGACCTGCATCTTAGACGTGACTAGCACAGCCAGCATTCAGAAGGCTTTGGAATGGACCAAAAAAGAAGTTGGAGATAAAGGGCTTTGGGGTCTCGTGAACAACGCCGGCCGCTCGCTTCCCATGGGTCCGTCGGAGTGGATGAAAATCGAAGACTTCGAAAGCACGCTCAAGGTCAACATGACTGGTGTGATCGAGATGACCATGAACTTCTTTCCTCTTGTCAAAAAAGCCCGTGGACGAGTGGTGAACGTTGCATCCGTCTTGGGAAGAGTGGCAGCTAACGGCGGAGGGTACTGCATCTCAAAATTCGCAGTGGAGAGTTTCTCTGATTGTCTCAGGAGGGATATCCAGAATTTTGGGGTCAATGTGTGCATCATCGAACCCGGTTTCTTCAAGACGCAGGTGACCAGCTTGGACCCCATAGAGAGGGAACTTCATCGCCTCTGGAACCAACTGACCCCTGAAGTGAAGGAGAGTTATGGAGACAAATACTTggaaaaatacATCAATATCCAGAGGCTGATCATGAACACCATATGCGACTCCGACCTCAGTAAAGTGACCAACTGCATGGAGCACGCTCTGCTGGCCGTCCACCCAAGAACACGCTACAGCGCAGGCTGGGACGCCAAGCTCTTGTGGATTCCCTTGTCTTACATGCCTGCTTGTGTTATAGATATTGCGCTGAAGCTGGTGTTGCCAAAGCCTGCAAAAAGTGTCTAGATTTGAAAGTAATTTTTAGGCAGGATGCTTTTTACTCTTACCTTTCATTCCTCTTATGACACACTGGATGACGCTCTATTATGGGTTCGGCACCTAGAGTTTACAAACACTGTGTGTCTGTAAATGAATAGTGTAAGTTATGACACTAACAGCatgttgtatatttatgaaaaattatacGAAGTAGTTGAATGGTGCCTTAAAATGCATCACCGGTTCGTGCCTTGTTTCCATAGAGTGCCACTGACTTATATTACTTAGCCTGTATTTGTCTGAAACTGTCAGAGTTAGTTGTTTGCATGGAATTCATATAACGCAActcaataaatgcatattttgtgtgCCTTGTGA

Function


GO:

id name namespace
GO:0035238 vitamin A biosynthetic process biological_process
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11154 RDH16; retinol dehydrogenase 16

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222166 lncRNA downstream 20229 5508570 ~ 5512967 (-) True G150121
TU222121 lncRNA downstream 27044 5497941 ~ 5506152 (-) True G150092
TU222122 lncRNA downstream 78864 5451436 ~ 5454332 (-) True G150093
TU222101 lncRNA downstream 85720 5441543 ~ 5447476 (-) True G150086
TU222216 lncRNA upstream 8695 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 42897 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 67584 5604157 ~ 5604418 (-) True G150184
TU222173 lncRNA upstream 117478 5654051 ~ 5655376 (-) True G150126
TU222267 lncRNA upstream 125177 5661750 ~ 5662188 (-) False nol8
XM_043222608.1 mRNA downstream 387 5527230 ~ 5532809 (-) False gls2b
XM_043222607.1 mRNA downstream 387 5527230 ~ 5532809 (-) True gls2b
XM_043222609.1 mRNA downstream 2582 5527230 ~ 5530614 (-) False gls2b
XM_043222899.1 mRNA downstream 7764 5523238 ~ 5525432 (-) True LOC122327491
XM_043222606.1 mRNA downstream 37117 5492090 ~ 5496079 (-) True LOC122327326
XM_043223015.1 mRNA upstream 3354 5539927 ~ 5542080 (-) False bloc1s1
XM_043222652.1 mRNA upstream 14056 5550629 ~ 5558239 (-) True rbck1
XM_043222522.1 mRNA upstream 70471 5607044 ~ 5634799 (-) True stab1
XM_043222555.1 mRNA upstream 101565 5638138 ~ 5652155 (-) True nisch
XM_043222556.1 mRNA upstream 107943 5644516 ~ 5652159 (-) False nisch
XR_006247634.1 other downstream 387 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 379340 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 796336 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 944774 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 1046853 4482821 ~ 4486343 (-) True LOC122327455
XR_006247648.1 other upstream 1983 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 1988 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 107840 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 322774 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 452927 5989500 ~ 5992723 (-) True use1

Expression Profile