RNA id: XM_043222803.1


Basic Information

Item Value
RNA id XM_043222803.1
length 2048
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC122327437
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3273135 ~ 3277399 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGGACACACACAAATCacgaaatattaataaaaaattattttgattatatatatttcattattattattattattatggtttgtttgtttttatacagtTAGGCAACTATCTGGGAAAGGCTCTGAGAATTTGGCAGAAGAAAAGTTCTAGAACGTTCTAAGCGGTAACTTCCTGATATCGCGGAAAGTGAACGGAGCGGGGGTCCATGGCTGCTTCGCTCGGAGGATACGTGCTCAAAACTAATTTCATAGTTACTGTAATTGCAGTGCTTACATTTCGTCTACACGGTGCATCTGATGTCGCCCCAAACAGAGTGTCCGTGATCGTGGCAAAGGGAGATTCGGTCACTCTCCGCACTAATATTACCATGAACCCGCGGGACAGGCTTAAGTGGTATTTCATCGACACTCTCGTCGCTCAAATCCCCGAAAACCTCAGATATAACTGCACGGATTTACTGAAGTGCACTAACGAGTACGAGAGATTCGGAGGCAGGCTGGAGCTGGATCATCGGACTGGAGATCTCACGATCGTAAACATCGACACCTCGCACGCTGATGTTTATCAAGTGAGGATCTTCGGCAGCCGCCATATTGAGTACATTTTCGAAGTCGTTGTCGAGGATGTTCCCGATGCTGAAACGATGACAATCTCATCAACGGAGGGAGAATCTGTGACTTTAGACGCCCTTGAAGTACGAAACCCAAATGATGTGATAACGTGGTATTTTAATGACTCCGTCATCGCCAACATCTCCGGAGATCAGAGTGAGATCTGTGAAGATGTTGACTGTAAAGAGAGATTCGGTGACGGACTTACGCTGGAtcatcagactggatctctgatcATCTCAAACACCAGAACCACAAACTCTGGACAATATCAGCTACAGATCAAATCTTACAAGGAGAGCTACAGCACCACCAGAATTAGGAGCTTCACTGTGTCTGTGACGGGTTCAGGCGTGTCTTTAGCTGTTAAAGCAGTATTATGTGTTGGCGTGTTTCTGATGCTGGCTACGGCTGCCGTTGGTTTGATTTATCCTCACTACGGGAGCTGCAGAAAGGTTGAAGAAAGACCTCGTGATCAGAGAAACGCTGTGAAGATTCTGATTCCCATAAGTGAGATGTCAGAAACAAATGCCTAATGAATGATATATGGATTATGGATGCTTAATGCAATTTTGGAAAGCATCCGCTGGACACATAAAGGGTACTCAGTCGTGACACACAGATGGGATGTTATACATAAACGACTGATAAATAGTCTTAaagtgatatttatatttatttaatttatttaattatttaaaaatggttatttCTCTGTGCTGCTCTTGGTGATGGCTATAATAATAGCAAAGCATACAGTTTACTGCATTTTCACATTGCATTATTAGCTGAAAATTTCGCTCaagcattatttttgtatttatttgcagtTATTTTGCTAATACTGTAATTACCTAGTGCGTACTCAGCAGTAGCCGTTGTACTTGCATAAATCAAACTGTACTGTTTGTACtcacagtttgtaattatgtagacgTAATAGGCTACTGTTACGCATTTGTTACAGACCAAGTGTGTTACACCGCTAACCAAAAGACTGTCACATATGTGTTGCAGACGTTATACAAcgtaattataaattcaagtacACAGAGATAAGGTACTTAGAGTGTATCTAGATTGTACTTAAGCGTAAGTGGCTGTGTAACGGACTCGGTCTGTAACATGTGTAATGGTAGCTGCATGTTACATGATTACAAACTAATTACAGGCTGTTCCGTAACTTAGTtacataaaaagtacatttaagtacagtggctactactaagtacctacAGTATTTAGGTAATTACTCTTTATTACAacaagttaaaataaagtgttaccgttttttttctattgagaTTATTTGTTTCTGTTACAACTGTACAACTTTTGGTTAtacaaatctgtcatttttgaGAAGAGGGACAAAACAGGGTGCAAAATAAACCGTTTTGTActcatttgtaataaaatttactttttatttca

Function

GO:

id name namespace
GO:0004520 endodeoxyribonuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220509 lncRNA downstream 21664 3251249 ~ 3251471 (-) True G149081
TU220504 lncRNA downstream 30330 3242421 ~ 3242805 (-) True G149076
TU220502 lncRNA downstream 37376 3233672 ~ 3235759 (-) True G149074
TU220500 lncRNA downstream 48608 3224148 ~ 3224527 (-) False dnase1l4.1
TU220496 lncRNA downstream 78331 3193288 ~ 3194804 (-) True G149071
TU220574 lncRNA upstream 72694 3350093 ~ 3353485 (-) True G149111
TU220577 lncRNA upstream 73055 3350454 ~ 3351332 (-) False G149114
TU220578 lncRNA upstream 73299 3350698 ~ 3351474 (-) True G149114
TU220575 lncRNA upstream 90751 3368150 ~ 3372307 (-) True G149112
TU220582 lncRNA upstream 99870 3377269 ~ 3449101 (-) True G149117
XM_043222719.1 mRNA downstream 93 3255396 ~ 3273042 (-) True cers5
XM_043222942.1 mRNA downstream 19420 3252113 ~ 3253715 (-) True LOC122327520
XM_043222612.1 mRNA downstream 29213 3239109 ~ 3243922 (-) False wu:fc11c11
XM_043222611.1 mRNA downstream 29213 3239109 ~ 3243922 (-) True wu:fc11c11
XM_043222893.1 mRNA downstream 43893 3224335 ~ 3229242 (-) False dnase1l4.1
XM_043222656.1 mRNA upstream 3210 3280609 ~ 3286516 (-) False LOC122327353
XM_043222655.1 mRNA upstream 3210 3280609 ~ 3286516 (-) True LOC122327353
XM_043222994.1 mRNA upstream 13111 3290510 ~ 3305204 (-) True LOC122327550
XM_043222759.1 mRNA upstream 31864 3309263 ~ 3315077 (-) False LOC122327410
XM_043222760.1 mRNA upstream 32361 3309760 ~ 3315077 (-) True LOC122327410
XR_006247638.1 other downstream 84 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 392730 2880334 ~ 2880405 (-) True trnad-guc_19
unassigned_transcript_2542 other downstream 393500 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2541 other downstream 1141852 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 1142177 2130887 ~ 2130958 (-) True trnad-guc_17
XR_006247635.1 other upstream 70021 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 110861 3388260 ~ 3414711 (-) False G149102
TU221027 other upstream 414101 3691500 ~ 3878716 (-) True G149410
TU221146 other upstream 879093 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 1152371 4429770 ~ 4433500 (-) False LOC122327456

Expression Profile