RNA id: XM_043222805.1


Basic Information

Item Value
RNA id XM_043222805.1
length 1278
RNA type mRNA
GC content 0.36
exon number 5
gene id LOC122327439
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3903931 ~ 3905997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaaaataattgcaataatcgCTGAAATCAATGCAACTGCTGACATCATGACTGTatatgatgatgttcttgacgggagattcagagacagactgaagatggacgatcaaactggatctctgaccatcatgaacaccaCAATAAAACATGCTGGACTTTACGGAATTAAGACCAACAATATGAGCAAggatttctttctctctgtctacGATGAAATCCCACTGAAGGAGGGAGAATCAGTCACTCTAAACACTCATCTTACTCAAATAATGGATTATGATGAGATTCAGTGGAGTTTTGGATTTGACTCTGTACTAGCTTACATTTATAGACAGGGCTCTAGAACCATGACTGTatatgatgatgttcttgacgggagattcagagacagactgaagctgaaCAATCAAaccggatctctgaccatcactaACGTCACAATGAAACATGTTGGACACTATAATCTATGGTTTAACGACATGCACATGTTTTTCTTCCTCACTGTCTATGATGATATATCAGTGaaggagggagattcagtcactctcaACTCTGATCTTACTCAAATAATGGATAATGATGTGATTCAGTGGATGTTTGGAAATGAAATCACTTTAATCGCTGGAATCTGTAAACAGACCGACATCATGACTGTATTTGATGATGTTCTTgacgggagattcagagacagactgaagatgGATGATCAAaatggatctctgaccatcacagACATCACAATGAAACATGAAGGACATTATCTTATTGTGTTTGGaccaaaacattcattaaaagctTTCAGAGTTTCTGTCTCTAACTCTGAACACTGCTGTGGTTTTACTGAAGCTGTGATCCGATTGGTTCTCTCTGCTCTGGTGGGCGTGGCTACTGTCCTTCTTCTGGTTTATGACATCAGATCCAGAAGAGCTAAACGAGATCAAACACACGTTCACACAACAAgaaatattgaaatataaaacagatgCTGAACTTTAAAGCTTCTTCACGTGTGGtttgttatattaaatgcagattaccggtattatttaattttattatttagtacaatgtaaatgtcttctaatattgttattattgtgatCAAGTTTAACCTCATATGAAGACATTATATTTCTCTGAGACTATATGATAGGTTGCTTCACCAGAATCACTCTCTTGCGcttcatcttttaaaatgtctgaaattaatttaatgaagtAATTATGACATGAAtctgtgtcatttttaaattgcgtGTCATGAATAAACATCCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221065 lncRNA downstream 24021 3878779 ~ 3879910 (-) True G149441
TU221023 lncRNA downstream 31912 3684495 ~ 3872019 (-) True G149408
TU221072 lncRNA upstream 22689 3928686 ~ 3929766 (-) True G149447
TU221099 lncRNA upstream 68166 3974163 ~ 4021597 (-) True G149460
TU221084 lncRNA upstream 69934 3975931 ~ 4004645 (-) False LOC122327411
TU221100 lncRNA upstream 81407 3987404 ~ 4016094 (-) True G149461
TU221093 lncRNA upstream 113287 4019284 ~ 4034737 (-) False G149458
XM_043223852.1 mRNA downstream 5467 3896983 ~ 3898464 (-) True LOC122328145
XM_043222991.1 mRNA downstream 16351 3884513 ~ 3887580 (-) True LOC122327546
XM_043223842.1 mRNA downstream 156127 3744546 ~ 3747804 (-) True LOC122328132
XM_043223841.1 mRNA downstream 159411 3742247 ~ 3744520 (-) True LOC122328131
XM_043222745.1 mRNA downstream 162909 3736141 ~ 3741022 (-) False LOC122327402
XM_043223853.1 mRNA upstream 4037 3910034 ~ 3916504 (-) True LOC122328146
XM_043222755.1 mRNA upstream 36131 3942128 ~ 3951104 (-) False LOC122327408
XM_043222754.1 mRNA upstream 36131 3942128 ~ 3951089 (-) False LOC122327408
XM_043222753.1 mRNA upstream 36131 3942128 ~ 3951085 (-) False LOC122327408
XM_043222758.1 mRNA upstream 36131 3942128 ~ 3946079 (-) False LOC122327408
TU221027 other downstream 25215 3691500 ~ 3878716 (-) True G149410
TU220553 other downstream 489220 3388260 ~ 3414711 (-) False G149102
XR_006247635.1 other downstream 554759 3347420 ~ 3349172 (-) False si:rp71-36a1.1
XR_006247638.1 other downstream 630880 3256009 ~ 3273051 (-) False cers5
unassigned_transcript_2543 other downstream 1023526 2880334 ~ 2880405 (-) True trnad-guc_19
TU221146 other upstream 250495 4156492 ~ 4158981 (-) True G149491
XR_006247644.1 other upstream 523773 4429770 ~ 4433500 (-) False LOC122327456
XR_006247641.1 other upstream 523773 4429770 ~ 4433500 (-) False LOC122327456
XR_006247642.1 other upstream 523798 4429795 ~ 4433500 (-) False LOC122327456
XR_006247645.1 other upstream 523804 4429801 ~ 4433500 (-) False LOC122327456

Expression Profile