RNA id: XM_043222899.1



Basic Information


Item Value
RNA id XM_043222899.1
length 973
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC122327491
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5523238 ~ 5525432 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGAAACCACAGTCGCACCAGCAActcttttaaaatgatcacatgCATGTTGCGTTTAGTCTCGGTCTTCATCTGTGTTGAAGgtgtgtttggttcTGATGGAGATGCAATAAAGTCAGTATCAGTGACTGAGGGAGATTCTGTCACTCTAAACACTGATGTTACTGAAGTACAGAGAGATGATCAGATACTGTGGATGCTTGGATCTAAAGACACCCGTATCGCTGAACTCTATAAGCACAGCGTTGATATGTTTAGCAGTAATGAGATGTTTGGAGACAGACTGGAGATGAACCCTttgactggatctctgaccttCAGAAACATCagaaccacagactctggactttataAACGACGGATCCACAGCAACAGCGGGAAATCAGAGAAGATATTCAACCTTACTGTCTAcgATCACCTGCCTGTTCCTCGCATCACCAAGTGTTCATCATCTAAAACCTGTTCAGTGTCCAGATGTTCACTGCTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattttccagcatcagtgtgtctgatctcagcagcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccagACATCTGAACATCAGTCAGCTCTGTCCACGATTTCCTTTCAGCTCTGTTGGCACTTCTGTGATTCCGTCCCTGATTTATGCTGCGGTGGGCGTGGCCGCCGTCGCGCTGCTCGTTTATTACGTCAGATCCAGAACGGACCGGAAAGAGAAAAAGCCACCATCACAACCCCAGCAACTCTTTTAGACGCCAGGTGGCAGTAACTTCACTCAAGTTCATGTGCGCTTCCCAAACGTAAATAAAAGCCCAGCTAAAGTGCTTCCTCGCAGTCGACCAAcattcttttttcattaaatcatcAGTTTGATAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222166 lncRNA downstream 10271 5508570 ~ 5512967 (-) True G150121
TU222121 lncRNA downstream 17086 5497941 ~ 5506152 (-) True G150092
TU222105 lncRNA downstream 52730 5418456 ~ 5470508 (-) False G150086
TU222122 lncRNA downstream 68906 5451436 ~ 5454332 (-) True G150093
TU222101 lncRNA downstream 75762 5441543 ~ 5447476 (-) True G150086
TU222216 lncRNA upstream 19836 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 54038 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 78725 5604157 ~ 5604418 (-) True G150184
TU222173 lncRNA upstream 128619 5654051 ~ 5655376 (-) True G150126
TU222267 lncRNA upstream 136318 5661750 ~ 5662188 (-) False nol8
XM_043222606.1 mRNA downstream 27159 5492090 ~ 5496079 (-) True LOC122327326
XM_043223877.1 mRNA downstream 32484 5481708 ~ 5490754 (-) True LOC122328171
XM_043223875.1 mRNA downstream 42379 5471936 ~ 5480859 (-) True LOC122328170
XM_043222709.1 mRNA downstream 89095 5430855 ~ 5434143 (-) True LOC122327381
XM_043222696.1 mRNA downstream 144351 5373452 ~ 5378887 (-) True LOC122327375
XM_043222608.1 mRNA upstream 1798 5527230 ~ 5532809 (-) False gls2b
XM_043222607.1 mRNA upstream 1798 5527230 ~ 5532809 (-) True gls2b
XM_043222609.1 mRNA upstream 1798 5527230 ~ 5530614 (-) False gls2b
XM_043222783.1 mRNA upstream 7764 5533196 ~ 5536573 (-) True rdh5
XM_043223015.1 mRNA upstream 14495 5539927 ~ 5542080 (-) False bloc1s1
XR_006247637.1 other downstream 369382 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 786378 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 934816 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 1036895 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 1089738 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 2125 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 13124 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 13129 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 118981 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 333915 5859347 ~ 5861317 (-) False timm13

Expression Profile