RNA id: XM_043222906.1


Basic Information

Item Value
RNA id XM_043222906.1
length 1488
RNA type mRNA
GC content 0.35
exon number 16
gene id LOC122327494
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5060198 ~ 5071072 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTCTATTTAAGTTAGCAGTCCGCCATAGAGAAAGAAAACCGTTAGCATCCGCCATTACAGATTCCCTTCTTTCCAGCGACGACTTTTGGTTTGAATAACGCAAACGTTCTTGTTCCACTTTTGTAGAATATAaagcatttgttatttaattagttaGTATATCTCTCTATAGGTGTTAACAGAGTTTTGTTAGCAGTCAGTCGGTTGATGGGTGTGGTTTGTCTCTTGCGTAAAAACCCAAAACGTTATAATAACCATAGTCATTTGCATTTGCCGGAATCTTCAACATtatgaaaacctttttaaaattgtttgtgatttttctgGTAATGTGCGAGAATTATTCAGATGCAGTGGAGATTTGGAGATCCGGGTCCAGTTATAGCTCAAATTGAGGAAAAGGAGATCTCATATACCAGTGATAAAGGATTCATTGACAGACTGCAGCTGgatcaaactggatctctgGTCATCAAgaacatgaaaacaaatcattctGGAATTTATAAACTAGAGATCAATACCAACAAAGAGACCTTATATGAGACATACAGAGTTACTGTGTATGAACCAGGTCTTTCTTCAGCTGCTGTAGCAGGGATCATCTGTGCTTGCTTGATTCTGGTGCTAGCTGCCACCGctgctggtgttttttttatttacgcaCGAAATCTGAAGTAGACAAACAAAATTCGAAAATCTCGGAACGACAAGATGAAACATTGGCGATCTCTGAAAAACTAAAGGAAATGTCTGAGATCTCCACAAAACTAGCGGAAGATTGTGAAAAAGAATTGCCTGATGTATTAGAACACCATCAAACGTCGAGGATCTCTGAAAAACTAAAGGAAATGTTGAAGGACTCTAAACGACTAAAGGAACTGTCAAAACACTGTGAAAAAGAATTGTGCAAGATCTCTGACAGACTAAAGGAAATGTCTTCGAAAAAGAAAGGACAGAACTCTGAACAAGAAACACCTTTGGTTGATGCCATGATCAATGAAGACCAAGAAACGGGTGATGAAGGTGAAAAAAAAGGGCCAGTTATTATGAAGACACTGTTATAAGTCTagtgaataaaaagaaagACTCAGCTGGAAAAGGAATGAATGAAGAAGCACATGTTTTAAGTGACTGAGCAGCAGACAGCTAAGCCACGGGGAGTCtgatgacttaaaaaaaaaaattgtgaaaactGTTGCTAAAGCATCAACATTACTCAAAATTAATTCGCTACATATACATAATCTTAtcctttactttatttaaagtgaaagtaaaataaatatgcttgcatgtgttactttttgtttgcttgccgTTAATTACATAACATAAGTGGCTTTGGAATATAAGTAGCAGAACTTTTCAGATGATAAAATTAATAGTGAAGGTGAAATATTGTTGAATTAACTAACATGATTCATATTCTTTTGGTTTCTGTAAACAATATTCttaacaattacaaataaaaaaaataaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221918 lncRNA downstream 18271 4932449 ~ 5041927 (-) True G149955
TU221917 lncRNA downstream 22643 4934007 ~ 5037555 (-) False G149955
TU221925 lncRNA downstream 56509 4991610 ~ 5003689 (-) True G149962
TU221926 lncRNA downstream 61022 4991961 ~ 4999176 (-) True G149963
XR_006247662.1 lncRNA downstream 94425 4957559 ~ 4965773 (-) False LOC122327586
TU221975 lncRNA upstream 70175 5141247 ~ 5142179 (-) True G150000
XR_006247653.1 lncRNA upstream 90300 5161372 ~ 5167342 (-) True LOC122327581
TU221955 lncRNA upstream 90323 5161395 ~ 5166906 (-) False LOC122327581
TU221956 lncRNA upstream 90372 5161444 ~ 5166985 (-) False LOC122327581
TU221957 lncRNA upstream 90372 5161444 ~ 5166906 (-) False LOC122327581
XM_043222572.1 mRNA downstream 38756 5016091 ~ 5021442 (-) True LOC122327307
XM_043222641.1 mRNA downstream 229699 4790547 ~ 4830499 (-) True asic1b
XM_043222651.1 mRNA downstream 274983 4777983 ~ 4785215 (-) True smarcd1
XM_043222770.1 mRNA downstream 282985 4773807 ~ 4777213 (-) True gpd1b
XM_043222976.1 mRNA downstream 287455 4770578 ~ 4772743 (-) True LOC122327538
XM_043222950.1 mRNA upstream 13768 5084840 ~ 5086512 (-) True LOC122327526
XM_043223871.1 mRNA upstream 36281 5107353 ~ 5108551 (-) True LOC122328166
XM_043222912.1 mRNA upstream 37688 5108760 ~ 5110661 (-) False LOC122327498
XM_043222911.1 mRNA upstream 37688 5108760 ~ 5110661 (-) True LOC122327498
XM_043222616.1 mRNA upstream 43095 5114167 ~ 5123251 (-) False LOC122327332
XR_006247647.1 other downstream 323338 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 471776 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 573855 4482821 ~ 4486343 (-) True LOC122327455
XR_006247643.1 other downstream 626698 4429820 ~ 4433500 (-) False LOC122327456
XR_006247637.1 other upstream 74854 5145926 ~ 5153856 (-) True LOC122327354
XR_006247634.1 other upstream 456485 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 467484 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 467489 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 573341 5644413 ~ 5652158 (-) False nisch

Expression Profile