RNA id: XM_043222948.1


Basic Information

Item Value
RNA id XM_043222948.1
length 1968
RNA type mRNA
GC content 0.52
exon number 5
gene id shisa10.1
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5745190 ~ 5751082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCATGGGAATGGGAGGGGCGTTTGACGGGTCGTGAGATCCGTATCGTGACGGGACCCGGGCCCGTTATCCAGCCACCGACTCCCTTCGCTGTGCGTCGTTTCGTCGGAAGCGTCCGTCTTTGTATCTCGCGCTCGGGACGGCGGTCTCGCGGTTACCGGTTGAACCTGTAGTTTAAGCCAGGCTCTCCCTTCCCTCGCCCGACACAGGACAGCCGTAGGCGTCTTCTCAGATTACGACATCCGCGAGGAAACGAGCTCCTTGTAGCCCGAGAGCTGAGCTATGGCGCCCGCCGTCCCGCTTCTTCTGCTCCTGTCCGCGGCGTTCATCGCGGAGACTTTCGCCGATGATGACTGCCAAGTCTACATGACCAGCTCCGGGGTGCTTAAACCCTCCATTGACTGCGGGTTTTTACAGTTCTGTTGCGGGACGTGTGATAACAGATACTGCTGCTCCAATCCAATGAAGAGGCTGTCCGAGGATGACCAGGACAGCTGTTTTTTCAGTGATAATAAGTCCGTCATTATCGGCATGAGCATAGCCGGGATTGTGGTCTTCATCATCATGTTCATCGTCTGCTGCGTCTGCCCCTGCTGCTGCCTCTACAAAATGTGCCGGACGCCCAGACCTGCTATGGCAACGACGACCACTACGGTGGTAAGCACGCAGTATCCTCAGCAGCCCGTTGTTCAGGGAGGTCAGTACCCGCCGTACCAGCCCATGCCCGCCCAGGCCGGATACGGCGGCACACCAGCCTACGGAGGACAGCCCGCGCCGACCGGACCGTACCAAGGCCAGCCGTATTCGTCGGTACCACCACCCCCATATCAGGAGGCCGGAGGCCCAGGATATCCTTTTCCTTACAGCAAAGCAGCATATGACGGTGGGCAGGCCTCGTACCCCTTACAACCCCCAGTTCAGCCCGGCTTCGCACCCCCACCGACAGACTACAGCGCGACTCAACCGGCTTACAACCCCGCTTACGTGGAGCAACCAAAGACCGGCTACTAAACCGCGACCTGAATTATCATCTTCACCCTGCAGGAGCGCAATGTTCATCTACTGCGGACAGCATCTTCCAATCGAGTCGGGAACTATACCTTCTGCATTCGCTATCTTTGTGTGTCAGCCTCGTTTTCTCGACTTACTTTTATatacgtacatttttattcactcCAGCCGCTGCGCATGACTCTAAGCCATATAACGTTTATGTTTCGTTCGTTTTCGTCCACTGAGCAAAAGGGAAACGTTTAACCGGCCTCCGAACGGGCAGCACGCCTCGTCTCGAAATGCCGCTTCGACGCCTTAAATACCGCCAGCTTTATTTTATCCTGGGAATTCGCACAAACCGTCGACACTTTATGGTGCATTTAACAACGCCGGCACATGATTTGTTCACGATTCTCGTAGCATTCGGGGTTTTTGAATTTGTGAATGTTTCATCAAAGCGTTCTCGCGCTCGGAGATCCGGAATATGCCTTATTTAATGCAGCTTATGCCTTAAACGCAACGTTCCCATGGTTTGCGTTTGGATTGTTTTATGGAGTTCGGGTTTCGGATGTTGCAGAAACGCCATGTTTATACGCGTTTCTCTTGCGAACTCTTTGCTCGAGGGTCTGATAAGCGTACCGCTGCGTTTGAAAGAACGGCAATAATTCGGTCCGAAATGACTTGAAGTGATGCGAAACtctcaattttaaaaagtgaacgCCGTTCAAGGGCAGGAAGAGGGCGAATTGTGAGCCGCTTGGCTGCGACGTGCTCTCATTGAAGTTGGGTCATATGTTTTCAATCCCTCTGGGTACAATCTTCCGCAGATTCTTGTCACGTTTGATATGATTCGGGTTTATTAACTGAGGTGTATGTTAAAAATGATCAGCgttctgttaaaatgtttacGCATTCGGGCGTCTCCTTGTGTGCAgccacaaataaaaagaaattgtgcTGGAATCACTGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222267 lncRNA downstream 83002 5661750 ~ 5662188 (-) False nol8
TU222173 lncRNA downstream 89814 5654051 ~ 5655376 (-) True G150126
TU222262 lncRNA downstream 140772 5604157 ~ 5604418 (-) True G150184
TU222171 lncRNA downstream 162149 5579470 ~ 5583041 (-) True G150125
TU222216 lncRNA downstream 199422 5545268 ~ 5545768 (-) True G150161
TU222313 lncRNA upstream 7247 5758324 ~ 5763955 (-) False LOC122327537
TU222203 lncRNA upstream 71852 5822929 ~ 5823913 (-) True G150152
TU222347 lncRNA upstream 100208 5851285 ~ 5851890 (-) True G150232
TU222348 lncRNA upstream 103124 5854201 ~ 5854403 (-) True G150233
TU222349 lncRNA upstream 103708 5854785 ~ 5855167 (-) True G150234
XM_043223011.1 mRNA downstream 11648 5732383 ~ 5733542 (-) True si:dkey-42i9.4
XM_043222672.1 mRNA downstream 13785 5720053 ~ 5731405 (-) True ippk
XM_043222603.1 mRNA downstream 31458 5703301 ~ 5713732 (-) False ecm2
XM_043222604.1 mRNA downstream 33319 5703301 ~ 5711871 (-) True ecm2
XM_043222743.1 mRNA downstream 43723 5695649 ~ 5701467 (-) True aspn
XM_043222924.1 mRNA upstream 3318 5754395 ~ 5757178 (-) False LOC122327508
XM_043222925.1 mRNA upstream 3318 5754395 ~ 5757128 (-) True LOC122327508
XM_043222975.1 mRNA upstream 6929 5758006 ~ 5763982 (-) False LOC122327537
XM_043222973.1 mRNA upstream 6929 5758006 ~ 5763982 (-) False LOC122327537
XM_043222974.1 mRNA upstream 6929 5758006 ~ 5763982 (-) False LOC122327537
XR_006247631.1 other downstream 93032 5644413 ~ 5652158 (-) False nisch
XR_006247648.1 other downstream 203110 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other downstream 203131 5538561 ~ 5542059 (-) False bloc1s1
XR_006247634.1 other downstream 212381 5527557 ~ 5532809 (-) False gls2b
XR_006247637.1 other downstream 591334 5145926 ~ 5153856 (-) True LOC122327354
TU222175 other upstream 108270 5859347 ~ 5861317 (-) False timm13
TU222356 other upstream 238423 5989500 ~ 5992723 (-) True use1
TU222410 other upstream 485175 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 531379 6282456 ~ 6285577 (-) True gcga
TU222663 other upstream 866498 6617575 ~ 6659352 (-) True G150440

Expression Profile