RNA id: XM_043222950.1



Basic Information


Item Value
RNA id XM_043222950.1
length 872
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122327526
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5084840 ~ 5086512 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTGAGgtcagtgatggagggagattctGTTACTCTAAACTCTGATCTTACTCAAATACAGTCTGATGATGAGATGATGTGGAAATATGACAACATTCTGATAGCTAAAATCTATGGGAAGGACAATAAGAGCAGGGTTTATAATGAAAGTGCTGACGgtagattcagagacagactggagctggatcagactggatctctgatcATCACAAACACCagaaccacagactctggactttataCAGCCTCCAGCAAAAACTCAGGAACAGTACTCTTCAGACTTACTGTCTACGCTCGTCTGTCTACTCCTGTCATTAGCAGAGACCCCTCTGTTTTCAGAACCTACCAGCATTGTTCACTGCTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcaatgtgtctgatctcagcatcagtctctctctaacTCTGGAGGTGGAACATCAGGAGAAAAACAACTATAGTTGTGTAGTGAACAATCCTGTCAGCAATCAGACCACACAGCTGAACATCACTCAACTTTGTCACATAAATTTAGATTTTATCCATTGTTGCGGTTCTACTGAAGCTGTGATCCGATTGGCCCTCTCTGCTCTGGTGGGCGTGGCTGCTGTTGCTGTGCTGGTTTATGAATTCAGATCCAGAAACCTTCGAGCAAAAGAGAGAGCAGATGTCGCAATCAAACAAGAATTAAACTGATTTTCCAACACGATCTCACCCCAACTCGTCACATATTGCCGCTTGGTCAAGGACCCTTTTGCATCACTTTTTTTGCAGCAAATTCAAAGGCCGTCAGACTGTGTTGGATTTTCACAAAGGTGTAGATGAATTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221918 lncRNA downstream 42913 4932449 ~ 5041927 (-) True G149955
TU221917 lncRNA downstream 47285 4934007 ~ 5037555 (-) False G149955
TU221925 lncRNA downstream 81151 4991610 ~ 5003689 (-) True G149962
TU221926 lncRNA downstream 85664 4991961 ~ 4999176 (-) True G149963
XR_006247662.1 lncRNA downstream 119067 4957559 ~ 4965773 (-) False LOC122327586
TU221975 lncRNA upstream 54735 5141247 ~ 5142179 (-) True G150000
XR_006247653.1 lncRNA upstream 74860 5161372 ~ 5167342 (-) True LOC122327581
TU221955 lncRNA upstream 74883 5161395 ~ 5166906 (-) False LOC122327581
TU221956 lncRNA upstream 74932 5161444 ~ 5166985 (-) False LOC122327581
TU221957 lncRNA upstream 74932 5161444 ~ 5166906 (-) False LOC122327581
XM_043222906.1 mRNA downstream 13768 5060198 ~ 5071072 (-) True LOC122327494
XM_043222905.1 mRNA downstream 13768 5067096 ~ 5071072 (-) False LOC122327494
XM_043222904.1 mRNA downstream 13770 5067096 ~ 5071070 (-) False LOC122327494
XM_043222903.1 mRNA downstream 13770 5067096 ~ 5071070 (-) False LOC122327494
XM_043222572.1 mRNA downstream 63398 5016091 ~ 5021442 (-) True LOC122327307
XM_043223871.1 mRNA upstream 20841 5107353 ~ 5108551 (-) True LOC122328166
XM_043222912.1 mRNA upstream 22248 5108760 ~ 5110661 (-) False LOC122327498
XM_043222911.1 mRNA upstream 22248 5108760 ~ 5110661 (-) True LOC122327498
XM_043222616.1 mRNA upstream 27655 5114167 ~ 5123251 (-) False LOC122327332
XM_043222615.1 mRNA upstream 27655 5114167 ~ 5123251 (-) True LOC122327332
XR_006247647.1 other downstream 347980 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 496418 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 598497 4482821 ~ 4486343 (-) True LOC122327455
XR_006247643.1 other downstream 651340 4429820 ~ 4433500 (-) False LOC122327456
XR_006247637.1 other upstream 59414 5145926 ~ 5153856 (-) True LOC122327354
XR_006247634.1 other upstream 441045 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 452044 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 452049 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 557901 5644413 ~ 5652158 (-) False nisch

Expression Profile