RNA id: XM_043223036.1


Basic Information

Item Value
RNA id XM_043223036.1
length 9019
RNA type mRNA
GC content 0.42
exon number 12
gene id nfia
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9013548 ~ 9171931 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGATCTCGAGCAGACCCAAGTCAACTAAATTGTGAtagtgatgatgatggtgacGATGAAGCGCGAGCCCTAATTAAGGAGAAAAAAGGACCTCAGGCACTCAGTGATGTGGAAAAAAAGGGCTCATCattgtggtgtatttttttaaggacAGCTCGCTCTGTGAGCAGATGACTGCCGCTCACCTTGCCACGGGGTCTGCGTGAGATTGGTTCATTgtcaaggattttttttttacccatgaTTCCATATGGTATGGAGTGGGCTACATGTTGCCCAACATGCCAGTGCAAATGTTTTCTCAATTAGGTGTCTTATCTCCGGTGAGTGCACTAGCATCAGATGAAGCTTGCTGACAGCGTAATGGCAGCTAAAACCTCGGAAGGCTCCATCAAATGGCAGCTCTGCTACGACATCTCGGCCAGGACTTGGTGGATGGATGAATTCCATCCTTTCATTGAAGCACTGCTGCCCCATGTGAGAGCGTTTGCCTACACTTGGTTCAACTTGCAGGCCCGCAAGAGAAAATACTTCAAGAAGCACGAGAAGCGCATGTCTAAGGAAGAGGAGCGAGCCGTAAAGGACGAGCTGCTCAGCGAGAAGCCGGAGGTCAAGCAGAAGTGGGCATCGCGGCTGCTGGCCAAACTCCGCAAGGACATCCGGCCGGAGTTCCGCGAGGATTTTGTGCTCACTGTCACCGGGAAGAAGCCCCCTTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATGAGGAGAATCGACTGCCTGCGTCAGGCGGACAAAGTGTGGCGCTTGGACCTGGTCATGGTGATTTTATTCAAAGGTATTCCGCTTGAAAGTACTGATGGCGAAAGGCTGGTTAAGTCTCCGCAGTGCTCGAACCCGGGGCTGTGCGTTCAGCCGCACCACATAGGAGTTTCCGTAAAGGAGCTCGACCTGTACTTGGCCTACTTTGTGCATGCAGAAACGGGGCAGTCTGAAAGTCCGAACCAGCCTAGTGAAGGTGACATCAAGGACCAGCCAGAAAATGggCACCTTGGCTTCCAGGACAGTTTCGTCACATCAGGTGTCTTCACCGTCTCTGAGCTCGTGCGAGTCTCACAGACCCCCATCGCGGCAGGGACGGGGCCCAACTTTTCGTTGGCAGACTTGGACAGCTCTTCCTACTACAGTATGAGCCCTGGGGCCATGAGGCGCCCCCTACCCAGCACTTCTTCTAGCAGTTCTGCAAAGCGTATCAAATGCATGGAGGATGAGGTGGACAGCCCGGGAGAGGAGTCCTACTACCCAGGTCAGGGACGCTCGCCTGGAAGCGGCAGCCAAGCCAGCAGCTGGCATGAAGTAGAGCCAGCTGGATATAAACTGCGTGGCTCGCTAGCTAGTTCGTTCATCTCAAGACAAGGGATGCCATCGCCTACCACATTAAAGAAGTCAGAGAAGTCTGGTTTCAGCAGCCCTGTGCCTTCGCAGACCGCTTCCCCTCGAACGGCATTCACACACCATCATCGACCTGTCATTACAGGACCCAGAGCGAGTCCTCACGCCACGCCGTCAAGTCTTCATTTCCCGACGTCGCCAATCATCCAGCAGCCCGGCTCGTACTTCTCCCACCACGCCATCCGCTACCACCCCCAGGAGACACTCAAGGAGTTTGTCCAACTTGTCTGCCCTGACAGTGGTCAGCAAGCTGGACAGGTGGGCTTCCTTAATCCCAACGGGAGCAGTCAAGGGAAGGTGCACAACCCGTTCCTGCCCACCCCCATGTtgccgcctcctcctcctcccccgaTGGCGCGACCCGTGCCCCTGCCCGTGCCAGACTCCAAACCTCCCTCCACCTCCACCGAGGGAGGCGGCAACTCCCCCACCTCGCCAACCTACTCCACACCGAGCACGTCTCCTGCTCAGCGCTTTGTCAGCGTGGGCCCCAGAGACCCCAGCTTTGTAAATATCCCTCAGCAGCCTCAGTGGTACCTGGGCTAAAGACTCCCGACACGGACCGGCCGCTCCCGAGGTCACACGACCACCCCCTCTGTCTCCCCTGAGTACGACCCGCAAACATGTACACCAGTCTGAACAGAGAGAAGCCACTTGCTGCCCCAAGTACCGGACAGACCCACAGCATGGCTCCAGCAGAACCCCGCCAAGCCCTGGAACAAGAGGAACCGACTCAACGCGCTTACACCCACTtactatatatctatatagtcCATATGTATTCTTCCATATGTATGGTTTACATGCCTATATTCATATATAGTAGCTGTCCAGCTCTTCTGAGGGTGGAgctcggaaaaaaaaaagaagaagagcttcGTTTTCTTGGAAACgtgcacgtttttttttttttttttttttggttttgtttggttttgttgtgttttttggttCACCCTCAAAGATAGACGAGGAAAACGTAACATGACGCAATCAAAGAGCTTCCCGCTTCTGTGCCTGTGGTCTTAAAGTGAATTCAAAGGCGTTTCCAACGCAGTCTACGGCTAAGGGTCGCAAACCCGCTAACCACCCGGAGGTCGGAGCTCTGCCTTTCAGTCACTCACAGTGTTTTGACGGATCAGTCCGGTTTTCGTATCGGTGAACGTTGGAGGTTTCGCCTGGGTCAGATATGCcaccagctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatctctattgCGTCTGCTGGCCAGGACCATTTCCTCCCCTTTccaccatcatcaccaccaccatcaaCACCATGTCAGATCAAGAACTTTCAAGGACTCAACCAAAcccatttttttcagttgttttgtgtcattttggGGCAGGCGATGAAGAAGTCATGAACGGTGATGTTTGATATCAGGTCATTTTACGGTATGCTAACGGGAGATCTCCCTCCCCGTTTGGAGGcatgttcatattttgtgtttttcgtacaaaaaaaaaaaatcatcgcGATTCTTTCTACTAAACCCCAGCGGAAGGTCTGTCGCACGCCAAGGGCCGAGTAAAGGTTCGATCTTCCATAAACTTCAAGAAAAGGTTAACCGTGAATACTGAATTGAGGAAAGTGCAATTTTGTTGGGTAGATGTTGGATTGTTAAATATCTTTGTAAGATAGATCGTTGAAGCGATTGttgaaaagtatatatataaatatatatatatttttcttcctAGTCCATTCACACCTCCAGGACTCTAAAATATCGGggtacaaaaaagaaaaaaaaacacgtaaagagaaaaatagaacaaataGCCTTGTGAGAAATAAGGGGAGCTGTAATtgatttttctgttgttgttttttttatgtgtttgtttgttcgttcaTCGATTGTTAGCATTGTAGAAcaaatatccctttaagaaatCTCAACGTTAAAACAAtcaatttagttaatttccaAAACGCTACAGCAAATATTTTCGTTTTAACCCTAGCACATAACGAAACTCGTAAGAAAATTAGCCGTTCGCAAAACCACGAACGGAAAAAATCGACCGTTTAAATGCCGACGCAAGAGGCGACATACTGAACTAACTTCCTCGCGGACGCTTTTGAAAGCGGCGAACGAAAATGTGAAGATCCAGCTTTCCTCGCATGcaatttttgtcattgtttttttttgagtttttgttcGTTTCCTGTacgaaatatatatatatatatataaatatatacacttacaGTCTCATCCACCGTCGATCAAAGCtcagtaaagtaaaaaaaaaaaaaaattaaagaaaataatctgCATGTTCTAGTGTTAGTGACAAATTTTTACATAGATTACGTAGAGTTAAAGTAGTGTGAAAAATATTGTAATCCCAACATTGGGCACTTGCCGATCAAGTATTTGTTtggtcctttaaaaaaaaaaaagggtattTTTACTGCTGTTCTCACAATCAACCAGCTAAACATCTCTCTGACTCTTCTTAGCTTGTCGTCATTTCTATAAAGTCTCCCTTCCTCCTTTATTCCCGTCAGAACAATCATTTTCATACGTACGCACTTCATCATCCCTTTTCCAACTGCACGAACAATTCCACATCGATGTGCCTTGAGCGATGGTCTAGTTCTGAGTTATTGCACAAGCTGCAATGTGGAGACTATCTTTTTACTTTCCCAGCCCACCTTCCACGTGTAGTCATTCGGAGAGAGTGAAATTAGTGCTAATTGATAATACGCAGTATTACTCTCCATTTAACTACGTATCGCCATTTTCGGTCGTCCGTTGCTTCAAAAACCCCATCGTTTACACTTCAATCAGTCGCAAGTCAATCATCCACCCGAGAAAATGCATCACGCAAAGGCTTTTGTGTCATCGTGCCCTTTTTTCTCTGAGTTAACAGTAGTGTATTGATATTTATGgatgttgctaaaaaaattctaaatgacaactactttttttttttttttttttttttcggtcttcctgttcttttttttgcgTTCCCAGAGATgaataatgaggaaaaaattaatatgcaatACTCGCTTGCACTCATGTAgtctagtctttttttttttttttatatatatatatttttttaccaccAAAGTGAGCACTTGACAGGTCAAGTGGCTGAACGTCAGTGAGTTTTTCATGCCCATTGATCAGCCTCACTTGGGTTTCACGCAACCAATCATCAGTGTTTTCGCATACGTGTTTTTTCGGTCAATCAATCAAGCCTTAAAAACTAGGAACCTTCCTTtccatcacaaacacacaaaagcaaaCAGGACAAAAAATATGCccagtttttgtacattttgacaAAGTTCCATGTTATATTAATTGTTTACCTGTTTATTTTCTATTGCATAtatcatttaagaaaaaaaactaattatggGGACAAATTTCCCAGGCATATGATGTGATGGTTTAGTAGTTACActtgtgtgggttttttttttttttttttttttttttttttttttttagcgtgatttattattttgtcattgttCTTGCCTACCCTTTAGAAATGAGTTGGGCATTACTTTCTTAATCGTCtgcactaaatataaaataatgacaattgtgataattgagaaaaaaaaaaagacaaaaaaaaaaaagcttccagGGCTTAAAAGAGCGAAGGGAAACATGATTGCACGGAtattttttgtcacaaaaaccTTGTTTAGAGCAGCCTGGCATCTAATCAGCGAGATTGGCTGTGTGTGTAAGATAATGACAAAATTGCAccctttttaaagaaagaaaaaagagaaaaagaaattcaaGCAATAGTTTGGGCAGTCTGTTTTGTTCTCgtgttgtgtgtgtaatttagttttttggtaCAATGTTGGAGAAGACGCGGGAGAAGCAAACAAACCGAATCGATTAGATACGAGAGATAGGGCGGACGCACCTGAGTATGGGAGATTTGatgtttgtatattgtatagttttattaattacactGATTTTAAAGCTGCCCTATTTTATAATGCAGGACTTTTGTAACATTGattaaatgaggaaaaactAGTGTTGTGaattttctgattgtttgtattaAGGCCACATAAATAGaactggttttgtttgtcctctGGGGAACTGGATTTAAGTTGaaaacttcctgtttcctgttttattttattttattttttttgctttttgctttcctttttgtatgtatttaaggACTTATTTCTTCTTTCGATGGTATAGAAGTACTCCTATACTTGAAAAGTGTAGGATGCCGAGGTGAAAACCCCATTGTAAATGGATGTTACAAGTATGCTGTATGTTTTGAAGGTTATTTGTTGCATCAGTGTTGATGAAGCTAAATCTAGATAATTCTGAGGATGTTGGTAAGAAGAGagcgtttttatgcattttaaaattagttttaggCAGAAGACAATGACATAGACAGCCAAAGGATGCCCCTATTATAAATGCATCTAGGCATCTTTTTGTGTTCACCATTCCATGCAGGAAAATAAACCGCTTGATATGCAACAtgattcttttttcttttcaacttCTTCATCTTTCTTCCACCGCCCACCAGCGCACACAGACACCCGAGCAACGCTAAACGACGCGAACGTCGGTCACGATAAAAGCCATTCCTCCGTCGATTCTACATTTCATGTGAAAGCGAGGCCCTCAGGTCACATAACTCACACGAAGATCGCTTGATGGTggtttaaaacactgaaaagacgTACAATTACtcaaaaaaagacttttcttgAGGATAAAGGGACGATGTTCAAAAATAAGGACATTTTGAGTTTGGCATGTCGTCCACTTTCCCATcccattttgtcatttttctgttCGGTTTAGGTTCAACTGTCTTGTGTTGTTCACgcagaatatataaaatataacattttattcaaatctgAACGTTCTACACTTTTAGTgatattttaaagggatagttcacccgcAAATGAAAATGGTCATCATTAAATGTATaggagtttctttcttctgttgaacacccaaagaagatattttgacaaaaatgttgaCTGTACCCATTGATTTCCATGGTATTTTTGTGTATACTATTGAAGTCGAAGGGTGCCGTCAACatgttaatttttgggtgaactgtccctttaatactttcattaaaaataacatcaatGTCATGCTAGTCCTAAAACAGGGTTGAATAAAGGTCCCGCAGGcctttatcatttttatgtcCCCATTTTTGTGGGCCTACTTGTTGTAACGCTTTCATTTGAGGCGGGAACAAAGCATTGGACGTTTTAAGGCAGAAATACGGCGTATATCAGGGTACTATTCAATGGtgagacattttaaaatctgaaaagccaaaaacacaataattgaATCAAGTACGCGGCCGCTCGTTGAAATAAACAACTACAGATTTGACTACGGACTTTTTTGTTACTTAAACACCTTCACTTTCGGGGGTCGATTTGCAGAACAGGGCCCGAAGACGAGCTTGGGTTGATGTTCAGGGGGCCCATCGTAGGGATAAACATGCTGTCAGGTTCACCACACCATGACTTTAACCCCATCATGCACCGGTGGCAGGTGGCTTAACTGCACCAAACGGTATCATTACAAGGTGCTAAATCTTGCTGATCAAGTGGAGGCTAACTGGAAACGACCCTGCTTTCTGATAGCATAGCAGCGTAATCCGCATGAGAACTATGCACTGACGACACGCTAATCTAATCAGAGTCTGGTACTTGCACCTTTgccttcctctttttttaagaaCTCGTATCGAAATCAAAGGAATAACGGAACTAAAAGCAAACCAGCATTTTACCTGATGTATTTAAGAAGATCAAATGTAGTGCCtgtgaaaaactgtattatatCGCTCTCTGAATATCAAACCAGTTAACAGTTTGTAATCGTTTCTGTTTTCTCAACACCACTAGCCTTTTCTGATTATAGCTGTTCAGTAACCACACTCTATAAACTGCATGCGCCCTCCATAACCAACAGATATAAACATGACTAGATGATCTAACCCAGCTCTGCTTCCAGTCACAATCCTCCAAGACGCTTCTCCGATTCATTCCGTTTACTTGTTCCCGACCAGTTTCACCGTAGTGTCATTTTATAGTGGAGTTATATGCTTCTACAAAAACATCTGAATTCTGGTCCATGTCCTGCTGTAGCCCTCCATTATCTCCAACAACAATCATGAAGGTCTGTGTTTCCTCATGTTCTCACACTCGACAATCGATACTCAGTGGAACTGGCCTCTTCTTGCCGTAGGTGCAATTCAACAAGCTCTGGAGATCTGAAGTTAAACACAAAAGGGTCTTTGACGGGGACGAGATTCGTGAAGAACGAATCCGATTCCTTAATGGTTCCTTTAACGATTCTATTAGTGGGTATAGGGAATAAATCTAACAACTGGGCTGAGCTGCAAACAAAGCGCATATTCCAGTCactatgttttctttttatgtaaaatattactgataaACCCAGATAAACGAGTTTTAGGACGTCCTCAAAAGAGCCGTTTGACTTCAAGCCAACTAAAGGGTAGGATTCAAATATCAACGAGCGTCGACTCGTTTTATTTTTAtcgaaaataaaagtttgcataCCATCAAGCCCAAAAGAGGTCTTCTAGCAGCCAGTGACACCCACAAACCGAAACATACAGTAAACGGTTACTATTGAAGTGTTTCCTCTTTGTTTATACCGATTATTAAATACCTTAAGGACTTGTACCACATGTTTTGGAAACACGTGCTTGTGCGTATTGTCTGAATAGTTCTGCTAGACCCCTTCTGTTGAAAATTAACCAGCACTGCGGCCCTAATCGTAAAGAAGACAATCGCGGCGGTTAGCGTGAAAGATTTCACATGAGTATCTGGCGTGGTTTTACAAGATCCCTTCAACCAACTCCACCACTCCAAACCTTCATCTCCATCACCTTCATCATTCATATATCCAACGCTGTATTGTGAGAAAACGTAACTATTTTACAAAGCAGCGATTTTGTGAAAAAGTACGCAAGACTGTTCAGCTGAGCCAGCAGGCAGGTTGTCGCCAATATCTGATTCGCAGAAGCGTAAAATAGTTACGAATTGCCACGAGTGTTTTGGTATAGCATAAAGCTCCATCCCACATCACTGTAAACATACGTTTTAGatacaatctaaaaaaaaattaataataattaaaaaaataaataaaaccttgtgCCTCTaatacatttcctgaagaaaactTCACGTTGTATTGGTACCAGCTCCGTAACTAGTTCCACGGAGCTTCTGTATTTGAGCTGTGAatgactttgtttgcttttcgGTTCTTACTCTgaacttttttccttttattttcgttttatgtttttttttttcctgtgtgtaGTGACATTGCCCCTTTCTCTTGGAGCCATTAGTGTCCACCTCCATTGACTCAATTACTAAAAGCAAGATGTGCATTTCCTATGCAACgagaaatgagagagaaaaaaaaaaaaaaaagaaagaaaccgaAATAAAAGACGCTAATGCTGTA

Function

GO: NA

KEGG:

id description
K09168 NFIA; nuclear factor I/A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223642 lncRNA downstream 72810 8949616 ~ 8950059 (-) True G151112
TU223641 lncRNA downstream 73842 8948788 ~ 8949027 (-) True G151111
TU223638 lncRNA downstream 105726 8915901 ~ 8917143 (-) False G151110
TU223639 lncRNA downstream 105726 8915901 ~ 8917143 (-) True G151110
TU223606 lncRNA downstream 214334 8807108 ~ 8808535 (-) True G151086
TU223864 lncRNA upstream 188604 9360531 ~ 9454347 (-) True G151266
TU223879 lncRNA upstream 215218 9387145 ~ 9398096 (-) True G151280
TU223896 lncRNA upstream 254226 9426153 ~ 9464513 (-) True G151289
TU223934 lncRNA upstream 444863 9616790 ~ 9621165 (-) True G151319
XR_006247729.1 lncRNA upstream 647766 9819693 ~ 9865888 (-) True LOC122327858
XM_043223442.1 mRNA downstream 26841 8892566 ~ 8996028 (-) False patj
XM_043223443.1 mRNA downstream 26841 8892566 ~ 8996028 (-) False patj
XM_043223433.1 mRNA downstream 26841 8892566 ~ 8996028 (-) True patj
XM_043223441.1 mRNA downstream 27526 8892566 ~ 8995343 (-) False patj
XM_043223439.1 mRNA downstream 27526 8892566 ~ 8995343 (-) False patj
XM_043222294.1 mRNA upstream 85204 9257131 ~ 9259978 (-) False nphs2
XM_043222293.1 mRNA upstream 85204 9257131 ~ 9259978 (-) True nphs2
XM_043223052.1 mRNA upstream 189346 9361273 ~ 9365286 (-) True LOC122327620
XM_043223051.1 mRNA upstream 189346 9361273 ~ 9365273 (-) False LOC122327620
XM_043223050.1 mRNA upstream 194404 9366331 ~ 9369136 (-) True LOC122327619
TU223633 other downstream 135928 8884121 ~ 8886941 (-) True G151107
XR_006247718.1 other downstream 1404471 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 1404471 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1967667 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 2109311 6906000 ~ 6913558 (-) True G150492
TU223881 other upstream 326753 9498680 ~ 9503006 (-) False gpx4a
TU223882 other upstream 326753 9498680 ~ 9501682 (-) True gpx4a
TU224081 other upstream 785884 9957811 ~ 9963626 (-) True G151425
XR_006247701.1 other upstream 1114651 10286578 ~ 10321663 (-) False polrmt
TU224207 other upstream 1247200 10419127 ~ 10422335 (-) True micos13

Expression Profile