RNA id: XR_006247699.1


Basic Information

Item Value
RNA id XR_006247699.1
length 2822
RNA type transcript
GC content 0.53
exon number 11
gene id nfia
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9013548 ~ 9171931 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCGTCAAAATTAGGTGCACTGCGCGCTAAAAGACGCGGGTTAAATTGACGATAGCACTTTCTGCATTGCAATACTTGGTGCACGACGGCACTGGGAGTGCACATTTCCCTCGTCCCGCATGTGCATGGCTCTCGCGCCGATATTGAGGGCGCTGTGCTGATGGAAGAGCCCAAGAGTTTGAACGGCAAAAGTGAACGGGAGCTTCGTCTCGGCGGACTCGAGTCGTGCGCttgcttcacttttttttccccctctgcctttctctctctctctctctccccctctctcagGTCGAAACTAACCGCGACACAAGTGGCAGCTTTTGCAACAGGGGGTTTTAAGGATATTACAATCTTCCTAAGCGTGCCGAGCCCTGCTCGCTGCTCGTAAATCCGCCTCAGTTTTGCTTCGCACCGCCACATGCCTCACGGCGGATGCAAGAGCGCGGCGCGGCGCTATAAGAGACAGCGAAGAATGAATCAAACGCGAGTTTTGTAACGCGTCCGGACGACTTTTTCTATCGTTTTTTTCTATTCAGATGACCGCAAGATGAAATAATCGCTCCTCTCGGCGCTTCATCGCCACAGTTTGACTCATGGCTCTGTGAAATCTCCGCGTACTTCCTTCCAGCCGTCCGTCGACGGGACTTTTCTCTAAGGCTGCGCTTGATGATAATGCCGAAAGTTTGGATATACGGCTTtaacagtacagtacagtagatGTGTGTAACTCGAGGCGGGGTTAAAGTTCAGCTCTATGGAGCGCTGAAGCGTCGCGCGCACTTCGCAGAGTTGGAAATGTGAAAGCAAGAAGCAAGGCTTTATTTTCCCTCTCTCCcttcttctctgtctctctttttttctcttttcatacacacatatacatacacacccCATACATTCGCACATACACACCCTCActcgcacacacgcacacacacacacaacatatacATCGCCAATTCAAGAGTTAAAACCGACAGATATGTATTCTCCGCTATGCCTAACACAGGATGAATTCCATCCTTTCATTGAAGCACTGCTGCCCCATGTGAGAGCGTTTGCCTACACTTGGTTCAACTTGCAGGCCCGCAAGAGAAAATACTTCAAGAAGCACGAGAAGCGCATGTCTAAGGAAGAGGAGCGAGCCGTAAAGGACGAGCTGCTCAGCGAGAAGCCGGAGGTCAAGCAGAAGTGGGCATCGCGGCTGCTGGCCAAACTCCGCAAGGACATCCGGCCGGAGTTCCGCGAGGATTTTGTGCTCACTGTCACCGGGAAGAAGCCCCCTTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATGAGGAGAATCGACTGCCTGCGTCAGGCGGACAAAGTGTGGCGCTTGGACCTGGTCATGGTGATTTTATTCAAAGGTATTCCGCTTGAAAGTACTGATGGCGAAAGGCTGGTTAAGTCTCCGCAGTGCTCGAACCCGGGGCTGTGCGTTCAGCCGCACCACATAGGAGTTTCCGTAAAGGAGCTCGACCTGTACTTGGCCTACTTTGTGCATGCAGAAACGGGGCAGTCTGAAAGTCCGAACCAGCCTAGTGAAGGTGACATCAAGGACCAGCCAGAAAATGggCACCTTGGCTTCCAGGACAGTTTCGTCACATCAGGTGTCTTCACCGTCTCTGAGCTCGTGCGAGTCTCACAGACCCCCATCGCGGCAGGGACGGGGCCCAACTTTTCGTTGGCAGACTTGGACAGCTCTTCCTACTACAGTATGAGCCCTGGGGCCATGAGGCGCCCCCTACCCAGCACTTCTTCTAGCAGTTCTGCAAAGCGTATCAAATGCATGGAGGATGAGGTGGACAGCCCGGGAGAGGAGTCCTACTACCCAGGTCAGGGACGCTCGCCTGGAAGCGGCAGCCAAGCCAGCAGCTGGCATGAAGTAGAGCCAGCGAGTCCTCACGCCACGCCGTCAAGTCTTCATTTCCCGACGTCGCCAATCATCCAGCAGCCCGGCTCGTACTTCTCCCACCACGCCATCCGCTACCACCCCCAGGAGACACTCAAGGAGTTTGTCCAACTTGTCTGCCCTGACAGTGGTCAGCAAGCTGGACAGGTGGGCTTCCTTAATCCCAACGGGAGCAGTCAAGGGAAGGTGCACAACCCGTTCCTGCCCACCCCCATGTtgccgcctcctcctcctcccccgaTGGCGCGACCCGTGCCCCTGCCCGTGCCAGACTCCAAACCTCCCTCCACCTCCACCGAGGGAGGCGGCAACTCCCCCACCTCGCCAACCTACTCCACACCGAGCACGTCTCCTGCTCAGCGCTTTGTCAGCGTGGGCCCCAGAGACCCCAGCTTTGTAAATATCCCTCAGCAGCCTCAGTCTTACGGATCCCTCTCAGCGAGCAAAACCTGAGACATTGCAGCAAAACCCCAAAACCCAGCACAGTCCACATCAGCAGTATCCCGAACAGGATCTTCCCATCTGAGGGGAGCGATGCACAGCGGTGGAGGACACcaagcagCGCTCCATAAATCCCCTTTGGGTGACATACGACGGGACGCTGGAACAAAGCAGGACCGAGGCCAAGAGACCTTTTACTTTTGACAGAATGTAGAAACACCGCCTCCTATAGGTCATTTGAGAAACAGTACTTTGTCCaatgcattcaaaaatacaatgatagatagatagatactatCTAGTGTCTACACTATCTACTACTGTACTAAGCAGTACTATGGTAGTATAGACATGCATAAGTACAtccacatacatatttataaagataaatacattttaaataaagggtCAAGTGAAGAACAGAACTCCAGACATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223642 lncRNA downstream 63494 8949616 ~ 8950059 (-) True G151112
TU223641 lncRNA downstream 64526 8948788 ~ 8949027 (-) True G151111
TU223638 lncRNA downstream 96410 8915901 ~ 8917143 (-) False G151110
TU223639 lncRNA downstream 96410 8915901 ~ 8917143 (-) True G151110
TU223606 lncRNA downstream 205018 8807108 ~ 8808535 (-) True G151086
TU223653 lncRNA upstream 3447 9145305 ~ 9147301 (-) True G151122
TU223864 lncRNA upstream 218673 9360531 ~ 9454347 (-) True G151266
TU223879 lncRNA upstream 245287 9387145 ~ 9398096 (-) True G151280
TU223896 lncRNA upstream 284295 9426153 ~ 9464513 (-) True G151289
TU223934 lncRNA upstream 474932 9616790 ~ 9621165 (-) True G151319
XM_043223442.1 mRNA downstream 17525 8892566 ~ 8996028 (-) False patj
XM_043223443.1 mRNA downstream 17525 8892566 ~ 8996028 (-) False patj
XM_043223433.1 mRNA downstream 17525 8892566 ~ 8996028 (-) True patj
XM_043223441.1 mRNA downstream 18210 8892566 ~ 8995343 (-) False patj
XM_043223439.1 mRNA downstream 18210 8892566 ~ 8995343 (-) False patj
XM_043222294.1 mRNA upstream 115273 9257131 ~ 9259978 (-) False nphs2
XM_043222293.1 mRNA upstream 115273 9257131 ~ 9259978 (-) True nphs2
XM_043223052.1 mRNA upstream 219415 9361273 ~ 9365286 (-) True LOC122327620
XM_043223051.1 mRNA upstream 219415 9361273 ~ 9365273 (-) False LOC122327620
XM_043223050.1 mRNA upstream 224473 9366331 ~ 9369136 (-) True LOC122327619
TU223633 other downstream 126612 8884121 ~ 8886941 (-) True G151107
XR_006247718.1 other downstream 1395155 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 1395155 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1958351 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 2099995 6906000 ~ 6913558 (-) True G150492
TU223881 other upstream 356822 9498680 ~ 9503006 (-) False gpx4a
TU223882 other upstream 356822 9498680 ~ 9501682 (-) True gpx4a
TU224081 other upstream 815953 9957811 ~ 9963626 (-) True G151425
XR_006247701.1 other upstream 1144720 10286578 ~ 10321663 (-) False polrmt
TU224207 other upstream 1277269 10419127 ~ 10422335 (-) True micos13

Expression Profile