RNA id: XM_043223049.1


Basic Information

Item Value
RNA id XM_043223049.1
length 5255
RNA type mRNA
GC content 0.54
exon number 22
gene id kdm4b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2690626 ~ 2733830 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGATTCGGCCAATCGGGGCCCACGTCGCGCTGCAGTGGGCGGAGACGCGGCCCAGCGCTGCTGTAACACAACCGAGCCTCTGGAATCCAGAAAACGGACAGAATCGACACGAAAACAGCgacaaaagagcaaaaaacgAAGCAGAGCAGGAGCGTTCGCCGACCTGCAGCCATGGACCCGGCTTTACCTCCAGACCCGACGGAGGCCCCGAGCCCCGAGATCAAGCCGGAGCCGTCAGCGGCAGAGCTCTCTCCAGAAGAGCCggccccggggcctcctccggCCGCCAACTCCTACAAGATCATGACCTTCAGGCCCACCATGGAGGAGTTCAGGGACTTCGGGAAGTACATGGCGTACATCGAGACCCAAGGAGCTCACCGCGCCGGTCTGGCGAAGGTCATCCCGCCGAAGGAGTGGAAGCCGCGGCGTTCCTACGAGACCATCGAGGATATGGTCATCCCCGCTCCCATCATGCAAGTGGTGACCGGTCAGTCGGGGCTCTTCACTCAATACAACATCCAGAAGAAGTCCATGACGGTCGGAGAATATCGCAAACTGGCCAACAGTAAAAAGTACTGCACCCCTCCGCACAAGGACTTTGACGACCTGGAAAGGAAGTACTGGAAAAACTTGACGTTCGTGTCGCCCATTTACGGCGCCGACATCAGCGGCTCGCTTTACGACCCGGACATCACGGAGTGGAATATCGGTCATCTGAACACTCTTCTGGACATGGTGGAGCAGGAGTGCGGGATCGTCATCGAGGGCGTCAACACGCCCTACCTGTACTTCGGCATGTGGAAAACCACCTTCGCCTGGCACACGGAGGACATGGACCTTTACAGCATCAACTACCTGCATTTCGGCCAACCCAAGTCCTGGTACGCCATCCCTCCCGAGCACGGCAAGAGGTTGGAGCGGCTGGCGCAAGGTTTTTTCCCAGGAAGTTCTCAGGGCTGCGACGCGTTTCTCCGTCACAAGATGACCCTCCTGTCTCCCTCCATCCTGAAGAAGTACAGCATCCCCTTCGACCGAatCACGCAGGAGGAGGGGGAGTTCATGATCACGTTTCCGTACGGATATCACGCCGGATTCAACCACGGCTTCAACTGCGCCGAGTCCACAAACTTCGCCACGCTGCGCTGGATCGACTACGGCAAGATGGCCACGCAGTGCACGTGCCGTAAGGACATGGTGAAAATCTCCATGGACGTCTTCGTTCGGTGTCTGCAGCCGGAGCGCTACGATCTGTGGAAACAGGGGAAGGACAACATGGTCCTGGACCACCTGAAGCCCACGAGCCTCACCAGCCCTGAGCTGGAGCACTGGAGGAAGACCAGAGTCACCTACAAAGAGAAGCTCCTGCGCAGagccCAAGCGAAGGTGAAACAGTTCCGGCGTCTGAAGCTGGAGGAGGTGAAGGCCCTGGCGGAGGAGGGGGTGGAGCTGGATATGAGCGAGTATCTTCGTAAGGTGGAGGAGCGCGAGCAGCAGCGGCGGCAGCAGAGGGACGAGCGCATGGCGCGAGAAGCGCTCCTCACGCTGGAGGCGctagagagagaggagcaggaGCAAGCGGAAGCAGCGCTTCGTGAAGGAGctGGTGAAGACGGAAAAACGGATTCTCTGGATCCTCCGCCGGAGAACggagaggagaagaagaagaagaagaagaagaagccgAAGCATGCCGACGAGCTCTCCTTCCAGGAGGTGTTCGAGCAGTTCGCCTCCAGCGACATGGAGAGTAACGGCTCCGCCCCCGGCCTGCAGCCGAGTTCCTTCACGAAGCTGAAGAAGAAAGTTGAGGTGAAGAAGAGTCGGAGACATCCGATCAGCAAGCCGCCCATGCGCTCTCCTCACTCCATAGTCAAACAGGAAGCCTCCAGCGACGAGGAGCTGTACTCTGGGCTGTCTGTAGGTGGCGACGTGCAGCCGGAGGCTAAGAAGTCAGAGGAAAGCGCGCTGTGGCAGAGTTGTTTGGCAAACTTCCCGGCAGAGAAACAGTTCAACGCTGCGATGGCGACCATCGAGCCTCACTGTGCCGTCTGCACGCTCTTCTGTCCATACACACAGCCCGTGAAGGACCCCTTGCATCTCTTGGACACGTCCGGTCTGGTGTCGCGGGTCGGCTGTCGCACGCGTCCTCTGGTTCCAGAGATGTGCTTCAGCGCGGGTGCCGAGAACACTGAACCGCTGCCGGCCAACTCTCACATCGGTGACGACGGCACCAGCGTCCTGCTGTCCTGCGGCAGCTGCAGCCTCCAGGTCCACGCCAGTTGTTACGGCATTAATCCTAACACGAAACAGGAGGGCTGGATGTGTTCTCGGTGCACAGCGGGCGATTTGACCGCCGCCTGCTGTTTGTGCAGTTTAAGGGGAGGAGCTTTGAAGAAAACCACAGAAGACAGGTGGGTTCACGTGATCTGCGCCGTGGCTGTGGCCGAGGCTCGTTTCGTTAACGCCGTGGAGCGAGAGCCGGTGGACGTGACGGCCGTCCCCGACACCAGGAAGAGTCTGAAGTGCGTCTACTGCCACAAGACGACCAAGCAGATCTTCGGCGCTTGTATCCAGTGCTCGTTGGACAACTGCTCCACGTCCTTCCACGTGACCTGCGCCCTCCTCGCCGGAGTCGTCATGAAGCCGGCCGATTGGCCGTACGTGGTGTCCGTCACCtgccacaaacacaaacagaccaATCAGAAGGTCAAAAACGGCTCGCGCGAGTTGTCTTTAGGTCAGGAGGTCATCGGCAGAAACAGCAACGGTTGGTTCTACCGCTGCACCATCACCGGCATCGGCACGCAGAACTACTACGAGGTCAACTCCGACGACGGCTCCTACTGTGATAACGTCTTCCCAGAGAACCTGCTGAGTCACGACTGCCTGAGGAACGGCCCTCCAGAACTCGGCGAACTCGTGGTGGTCAAGACGATCGACGGACGGGTTCTCAACGCGTCTTTCATAAAGGAGCACATCCACCGATACTACCAGGTGGAGTTTCAGGATGAGACGCAGATCTTACTGAAGCGCAGCGAGATTCACTCGCTGAACCAAGAGCTGCCCAAGAGGGTCATGTCTCGTCTGGCAACTGTGAACCAACAGCAACCTCAGGCGCAACCGTCGGATGAACCTCTGGCCGCGAAACGCCCGCGTCTGCCGACGCCGCCACCCACGCTAGCCATCGAGCCCTCGGCGCTACCTCCAGAAATAGTCACTGCTTTCCTGCCCGCTAGTATTACTCCGAACACCAGCACCGCCCCCTGCCTGCCTCCCCCCGCATCGCTTCCTGTTTCAGCACCCGCACTTCCTGCCCCGGAGCCCAGCGAGAGCTACACCCACAGCTCCAGCTACATCGCGTACATGGAGTCTCTCCTCAACTCGGACTTTCCTCCAGAAGAGGGCGAACATGGCGTCGAGCCGATGTATTGAAGCGCAGCTAAGCGCTACCAGCTATTTGTCGACGCTTCGTACAGACTTCGAGTTCATCCACTGCATGTCTTCGTTTCATTTATTCGCTGTCGTGCTAATCTGAGTCTCCCACCCGTGAATGATGCGCGCGGGACGCATGCGTGTCGTTATAGACCGGAGCCGTGACGGACCCAGTACATAGCCTTGGGGGACGCCGCACTCTTCCGACCCTTTCCACGACTCCTCGCTCTGGTTCTTTCGCTAAACGGAAAGAGCCGCCATACGTTTTCAGACGGGATAATCATTCGCCGTACGTGCTGTTTACTTTatacctgatttttttttttttctctaacgagtgctaaatatttttctaactCGAGCCAAAACGTCACGCTAGCCGGTCACAGCTCAAATAGACAGTCTATATCTGTACAGCTTCAGGTATTTTTCTCTGTACTCAAGTGTTCGGGGGGAAGGGGGTCACAGGAAGAGTTTTCGCCGGGGCTCGTGGGATTTAACaagtatttaaatgtcttttgtcacatatagatttaatatttgtataaaagaAAATCACTTATGGCAGCATCAGAAGCTACAGTTTTCAATTAGCATACACGTTTGTGTTACGATAGATCCTGGCGTCTTCACGTATTCTTCTATAATCTAcgatgaaaatgttttttcagccACAGACGATTTGTTTTTGTAGCATACTCGGTAGACGTTGATATCGAATACTATTCACCtcgtctgtttttttattatgattactgttgttgttacgattattatttttattgatttctatTTTGGTGAATCTTTGCAACGCGATGTCGAAGGAcggaggagaaaagaaaaaaaaaaaaaaaaaaagttgaatttatcatttttattcgAGAGGTTGAAGTGGCGTACATTTAAGCGTATAGTCATAGGTGGTGTTAAACGGATACGCAGTCCGCCTTCTCAAGGTGCTATAGAGGTCTTAGACTACTGAGGGGCGATCTGGGTCGAGTGATCCACAACGAGGTGTACATACTAGATGTCCTGCTCACgaattggagaaaaaaaacaaacttctgTGTAACTCCTAGTCTTATCAAATGCCATGTTACATTCAAATAAAGGGTCTGGTTGTCACTTTAGTTTTCTTTTACCCTTTTTGTTGTTTGCCCATCCTTCCTTCGCTTTCCGATGCTAACGATTAGCACGCTACATGTATCTATCTATGTTACATTCAGTACCCCTTGATTGATTGGGAATCAAACACCGAAGATCTTACAGGCCGAAACCGAAATGAACCCAGTACGCCGCGCTCTTCAGGCCCTTCCCACAATCCCTCGCTCCCAACTCTTCACTAAACCGAAAGAAGGCTCTAATATTTTCAGATGGAACAATCGTTCAGCGCGCCAAAGATTTCGGAGAATTGTTCAAAATGCAAGGTAAATAAACACGAGGACAGCCCTTCTTTTTCTGTATCCAATTTATTTGGCACGTTTTTAAGAATAACATCCGAGTTCCGCCTTTACGTATGAAGTGAACTTGTGAGCGCTTCCTCTCTCCTTCCGTTCAACGTGACAACCACCGTTCTCATCTCAACACTGTTTGTTGTTTCCTGCCCACCAGTGACGCCTACGGCTGCTGACGCTAGGAGCGGCGCGTCGACGGCTACCGTGCTCCTCTGTTTCTGGGGTTTCTTCTTAGCATTAACAGAAACTTCACGAGGGGCCGGTTTAATGAAATAACCCACCACAGCTTGCATACTGATGATGGCAAATGTTTATCTGTGCAGAAGTACTAGGAAAGATTCTAATAAAATGTGAAGTGAAACTGTG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219965 lncRNA downstream 97897 2591572 ~ 2592729 (-) True G148749
XR_006247728.1 lncRNA downstream 127403 2527094 ~ 2563223 (-) True LOC122327855
TU219961 lncRNA downstream 128069 2527434 ~ 2562557 (-) False LOC122327855
XR_006247777.1 lncRNA downstream 166324 2518437 ~ 2524302 (-) True LOC122328197
TU219932 lncRNA downstream 444821 2244631 ~ 2245805 (-) False gpr35.2
TU220199 lncRNA upstream 140582 2874411 ~ 2983937 (-) True G148889
XR_006247685.1 lncRNA upstream 162131 2895960 ~ 2898650 (-) True LOC122327605
TU220234 lncRNA upstream 307623 3041452 ~ 3045417 (-) True G148906
TU220258 lncRNA upstream 324181 3058010 ~ 3058631 (-) False LOC122327369
TU220267 lncRNA upstream 368750 3102579 ~ 3102897 (-) True G148927
XM_043222235.1 mRNA downstream 221065 2297233 ~ 2469561 (-) True ptprsa
XM_043223789.1 mRNA downstream 401299 2282224 ~ 2289327 (-) True tbxa2r
XM_043223425.1 mRNA downstream 420771 2256136 ~ 2269855 (-) True si:zfos-943e10.1
XM_043223426.1 mRNA downstream 427152 2256136 ~ 2263474 (-) False si:zfos-943e10.1
XM_043223808.1 mRNA downstream 435427 2251211 ~ 2255199 (-) True gpr35.1
XM_043223536.1 mRNA upstream 1330 2735159 ~ 2748590 (-) True uhrf1
XM_043223082.1 mRNA upstream 50849 2784678 ~ 2849559 (-) True fbn2b
XM_043223943.1 mRNA upstream 142229 2876058 ~ 2878821 (-) True LOC122328226
XM_043222699.1 mRNA upstream 146725 2880554 ~ 2887494 (-) True rad23ab
XM_043222701.1 mRNA upstream 154353 2888182 ~ 2891766 (-) True calr3a
unassigned_transcript_2541 other downstream 559343 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 559668 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 559930 2130623 ~ 2130696 (-) True trnai-aau_114
unassigned_transcript_2537 other downstream 562691 2127862 ~ 2127935 (-) True trnai-aau_113
TU219884 other downstream 574443 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2542 other upstream 145735 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2543 other upstream 146505 2880334 ~ 2880405 (-) True trnad-guc_19
XR_006247638.1 other upstream 522180 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 613591 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 654431 3388260 ~ 3414711 (-) False G149102

Expression Profile