RNA id: XM_043223096.1



Basic Information


Item Value
RNA id XM_043223096.1
length 2484
RNA type mRNA
GC content 0.49
exon number 8
gene id ddx59
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15189827 ~ 15194872 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ccaatataataaaaataatcttcaGGATCATCATACAATAatagcaacaataataataataacaataataacaatagtatAGTGTGATATGCTTTTATTAGTAAAACATTATCATTTATTCTAAGAagatataatacatacatataatagtGTCATACAAAATGCAAAAGGTCCGCTTTGCCccagtaaaattaataaagctaAAATTTTGGTTTGTctgaataaagaaaattatttactcacctttaattattgcaaaataaacattaagatactttataaaatcataatattaatgCTTCCTAAAAAACATATTATGAACTGATCTAAGTTTTAAACAGAATTACAGAACAGGTGAGGGAACTTCACACCATTTGGTTACtgataaatattcaaaaccccTTAAAAACTACAACCCCCGGCTTTACTGTAACCTTTATGTGACGTCACAAGCACGCGACCGTTCGGAAGCGATTCTGTTCACGGATCTTATCTGAAATATGCGGCTTAAAGCGTTTCAAGAAGATATATAATcaacgtttttcttttttctgttttttattgatataaGCGTGGTAAATGTAGGTAGAAAATGTTTATGCCGAGATCACTGAAGCTCAAGAGAGCCCCGGAGTCCcatcaacagcagcagcagaaccCGAAGAGAAGCAAAGCGACACCCGAAGACACGGTTTCTGCATCTCCACCCCACACCTGTCCTCCAGGGGACACCGTTAATATAGAAAAAGAGGAGGAACCCCATCAGATAGAGACCGAAGACGCGGAGGAACCGGAGGAACCGGTGAAGTCCTTCAAGAAGAGCCAGAGATGGCCAGATCCCGGAGAACCTGTGTGTGTCATGTGCGGGCGATACGGGGAATACATCTGCGATAAAACAGACAACGATGTCTGCAGTCTGGAGTGTAAAGCCAGTCACCTCGCTAAAATGTGCTTGGATTTCGGAGAGAAGGTGTTTTGTAAAGATCTCCAGGAGGCTTCGGACGGCTCCAGTGCAGCCGACGCCGAGCACAGTTACTCCTACAAGGAGGATGTTTTCATATCTGAACTGACCGAGGGCCAGGTCGAGAGGGTTAAAGCCGAGCTGGCCATAGTGACCTCCGGCAGCGAGGTCTGTAGACCTGTCATAGAGTTCGAACACTGTAACTTTCCCGCAGCGCTTGGGCTCAACCTGAAGAAGGCCGGCTACGAGGCTCCCACCCCCGTCCAGATGCAGATGCTGCCCGTCGCTCTGAAAGGCAGAGATGTGATCGCTTCCGCAGATACAGGCTCCGGAAAGACGGTCGCCTTCCTTCTTCCAGTGGTCATGCATGCTCTCCGGAGCCGAGCTGCCTCTGCGTCTCGCCCCCCGTGTCTCATCCTGACCCCCACCAGAGAGCTGGCCGTCCAGATAGAGAAGCAGGCGAAAGAGCTGGTGATGGCTCTGCCCAACATGAGAACCGCTCTGCTCGTGGGGGGCATGCCTTTGCCCCCTCAGCTGCATCGGCTCAAGCAGAACATCAAGATAGTGATAGCCACCCCAGGACGCCTTCTGGAGATCCTGAAACAGAAGGCTGTACGGCTGGACAGCGTCAGGACCGTTGTGGTTGACGAGGCGGACACCATGCTGAAGATGGGATTCCAGCAGCAGGTTCTTGAGGTTCTGGAGCAGGTCGCTGAAGATCACCAGACGCTGTTGACGTCGGCTACCATTCCCACAGGGACGGAGCAGCTGGCGTCCCGTCTCACCCGCGACCCCGTGACCATCACCATCGGTCAGAAGAACCAACCCTGCGCCAGCGTCCGTCAAATAGTCCTCTGGGTGGAGGAGCCgtcgaagaagaagaagctttttgagattttaaatGACAGAAAGCTCTACCAGCCTCCAGTAGTTGTGTTTGTGGACTGCAAACTTGGGGCTGATTTGCTGTGTGAAGCTGTGCAGAAGGTCATGGGATTAAACACAGTTGCTATCCACTCCGACAAGCTGCAGTGGGAACGCAACAAAATAGTAAAgGGTCTTCTCGAGGGCCAGTATGAAGTGGTGGTCAGCACCGGGATTCTCGGCAGAGGACTGGATCTGGTCAACGTGAAGCTGGTAGTGAACTTCGACATGCCAGCTAACATGGATGAATACGTTCATCAGATCGGGCGAGCGGGTCGACTGGGCCACAGAGGCACCGCCATCACTTTcgtcaacaacaacaacaagcgTCTGTTTCTGGAGATTGTGAACCGAGTGAAACCCACGGGCTCCATCCTGCCTCCGCAGCTCCTGAACTCTCCACATCTGCACGAACAGCAGCGGAGAGCCAGACAGAGGAGCGGTCGAGCTCGGGACGGCCCCGTGTCCAAGAGCAGCCTCATCGACATCATCAGGAAGCACGACAGACGGTCTGCCAACAAATAACTGAACCATACCTTTATTAGCAGGGTGCCGCTTTTCTACTTTTGTATTTTCAATAAACGCTAAAGGCGAACGAA

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19466 DDX59; ATP-dependent RNA helicase DDX59

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU226598 lncRNA upstream 52204 15136335 ~ 15137623 (+) True G153083
TU226578 lncRNA upstream 77849 15110215 ~ 15111978 (+) True G153065
TU226553 lncRNA upstream 82901 15078846 ~ 15106926 (+) True G153050
TU226559 lncRNA upstream 99910 15087487 ~ 15089917 (+) True G153056
TU226556 lncRNA upstream 106173 15082920 ~ 15083654 (+) True G153053
XR_006247706.1 lncRNA downstream 95823 15290695 ~ 15311067 (+) True LOC122327701
TU226731 lncRNA downstream 256577 15451449 ~ 15512639 (+) False G153178
TU226739 lncRNA downstream 259092 15453964 ~ 15454729 (+) True G153180
TU226740 lncRNA downstream 260040 15454912 ~ 15490268 (+) True G153181
TU226742 lncRNA downstream 273178 15468050 ~ 15516152 (+) True G153182
XM_043223844.1 mRNA upstream 54231 15130400 ~ 15135596 (+) True scamp4
XM_043223127.1 mRNA upstream 69998 15114186 ~ 15119829 (+) True ubxn6
XM_043223538.1 mRNA upstream 186857 15001033 ~ 15002970 (+) True LOC122327882
XM_043223537.1 mRNA upstream 224240 14937292 ~ 14965587 (+) True lmcd1
XM_043223794.1 mRNA upstream 252892 14928500 ~ 14936935 (+) False gmppb
XM_043223940.1 mRNA downstream 1044 15195916 ~ 15219764 (+) True kif14
XM_043222362.1 mRNA downstream 25575 15220447 ~ 15288892 (+) True LOC122327180
XM_043222363.1 mRNA downstream 25575 15220447 ~ 15288892 (+) False LOC122327180
XM_043223763.1 mRNA downstream 428223 15623095 ~ 15712086 (+) True dennd1b
XM_043223765.1 mRNA downstream 428223 15623095 ~ 15712086 (+) False dennd1b
TU226184 other upstream 498019 14686504 ~ 14691808 (+) True G152808
TU226124 other upstream 727167 14458149 ~ 14462660 (+) True G152767
TU226044 other upstream 1147306 14040724 ~ 14042521 (+) False LOC122327219
XR_006247779.1 other upstream 1222602 13967107 ~ 13967225 (+) True LOC122328230
TU225879 other upstream 1507880 13575738 ~ 13681947 (+) True G152584
TU226683 other downstream 17586 15212458 ~ 15216942 (+) False kif14
TU227010 other downstream 809692 16004564 ~ 16035615 (+) True G153322
unassigned_transcript_2545 other downstream 927568 16122440 ~ 16122512 (+) True trnaa-agc_18
unassigned_transcript_2548 other downstream 931664 16126536 ~ 16126608 (+) True trnaa-agc_19
unassigned_transcript_2549 other downstream 933038 16127910 ~ 16127982 (+) True trnaa-agc_20

Expression Profile